Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_F06
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.1
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 27 3.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 5.3
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 7.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 7.1
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 9.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 9.3
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 9.3
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 25 9.3
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 198 STHSPHIYFTTSYSQYAECS*TRNGS 121
++HSP+I T SY+ ++ + TRN S
Sbjct: 86 TSHSPYISPTMSYTNHSPANLTRNSS 111
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 374 NNSAAKVGEIFTEAGAAFNKLAEMIMLLHPIAETTPSVQAKTPVKRKATDEKYAPSTSGQ 195
N +A KV +A FN L + + P T +Q TP++RK STSG+
Sbjct: 142 NTTAVKVVSWILQALLLFNLLESVWQFVRP-QPTFDDLQL-TPLQRKLMGLPEGGSTSGK 199
Query: 194 H 192
H
Sbjct: 200 H 200
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/68 (19%), Positives = 27/68 (39%)
Frame = -3
Query: 287 PIAETTPSVQAKTPVKRKATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPEMEVESLG 108
P++ + + P+ AP+++ QH +S V N +N P + + S
Sbjct: 237 PVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSVPSNTINIPTDSLSIVSNP 296
Query: 107 GDVKLEFE 84
+F+
Sbjct: 297 SQTPAKFD 304
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.4 bits (53), Expect = 7.1
Identities = 7/29 (24%), Positives = 19/29 (65%)
Frame = -3
Query: 524 SIVHDYIYKTGTLIYLPHDLYLVNTIEQY 438
+++ D+++K + +Y P + + V I++Y
Sbjct: 1170 ALMRDFVWKYSSRMYYPEEYHYVQEIQKY 1198
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -3
Query: 206 TSGQHTVHTSISQQVTLNMLNAPEPEMEVESLGGDVKLEFEPSTE 72
+S + T IS+ T+N +AP+ + + + K+ E S +
Sbjct: 82 SSDNAAIDTDISEDETINQRHAPQTDYRYPNTSANPKMGLEESMD 126
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = +3
Query: 315 FVKSGAS----FSENFANLSSGIIHY 380
FV+SG S F FA++SSG +HY
Sbjct: 37 FVRSGLSKFSKFVYAFASISSGFLHY 62
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 311 AEMIMLLHPIAETTPSVQAKTPVKR-KATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPE 135
A++I L+ PSV A + V ++T+++ STS I++ T PE
Sbjct: 385 AQLIQLVEN--RNNPSVAAASNVAADQSTEDESIESTSTNVVADDLITEAETATEAEEPE 442
Query: 134 PEME 123
PE++
Sbjct: 443 PEVQ 446
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 3 YXGLNDIITFTKLLKFASLSXNFLCAWLKL 92
Y G ++ +FTK F S + +F W K+
Sbjct: 579 YLGAGEVTSFTKSSTFTSATNSFDLIWKKV 608
>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 109
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 200 GQHTVHTSISQQVTLNMLNAPEPEMEVESLGGDV 99
GQ + + +QQ ++N PEP+ E D+
Sbjct: 39 GQFLLDANANQQKQKEIVNQPEPQQETPKADADM 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,333
Number of Sequences: 5004
Number of extensions: 49430
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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