Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F06
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    32   0.34 
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435...    29   2.4  
06_02_0203 + 12986685-12988691                                         29   3.2  
11_06_0722 - 26678873-26680843                                         28   5.5  
04_03_0053 - 10286076-10286516,10286560-10287586,10287756-102880...    28   5.5  

>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +3

Query: 24  ITFTKLLKFASLSXNFLCAWLKL*LDITTQAFNFHFWFRSIQHIESNLL*NRCVDCVLTR 203
           I F+K+LK A++    LC  L+   ++T   +N    F+ I   ++ L  NR VD ++  
Sbjct: 677 IFFSKILKLAAIRIRNLCERLRH-EELTVSVYNI---FKQILDQQTALFFNRHVDQIILC 732

Query: 204 CAWCIFFICSLSL 242
           C + +  +  LSL
Sbjct: 733 CLYGVAKVSQLSL 745


>06_01_0604 -
           4358278-4358442,4358835-4358943,4359236-4359331,
           4359823-4359956,4360639-4360905,4361225-4361310,
           4361409-4361501,4361601-4361696,4361986-4362093,
           4362473-4362493,4363856-4364156
          Length = 491

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 635 TLYVCICEIKICTYIPTVVN-S*WRN*CIDVFNSN---VERSIVHDY 507
           T+Y  + E++   ++  ++N S W   C DV N+N    ERS++H Y
Sbjct: 342 TVYFNLAEVQKALHVSPIINKSKWET-CSDVVNTNWKDCERSVLHIY 387


>06_02_0203 + 12986685-12988691
          Length = 668

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -3

Query: 287 PIAETTPSVQAKTPVKRK---ATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPEMEVE 117
           P A TT   +A  PV      A DE +  +T+G+H    +  Q  T +     + +   +
Sbjct: 492 PPATTTLDAEAAMPVPNSNAIAADEAHGNATAGEHDKKETAEQTTTTSASTVGQQQEARD 551

Query: 116 SLGGDVKL 93
            +G  VKL
Sbjct: 552 QVGQLVKL 559


>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 533 VERSIVHDYIYKTGTLIYLPHDLYL 459
           VE + VHDY Y    LIY  H L++
Sbjct: 258 VELAFVHDYFYTKYFLIYSSHHLFV 282


>04_03_0053 -
           10286076-10286516,10286560-10287586,10287756-10288096,
           10288198-10288248
          Length = 619

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 269 PSVQAKTPVKRKATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPE 129
           PS++  +P K +AT  K   ++   H     ISQ + L ++N+ + E
Sbjct: 75  PSLEKTSPEKSRATCYKCVSASKQVHWDEIGISQALALTIVNSAKDE 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,410
Number of Sequences: 37544
Number of extensions: 282694
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)