Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F04
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0255 - 21323382-21323966                                         28   6.7  
12_01_0085 - 689489-689935                                             28   8.9  
01_06_1454 + 37498513-37499154                                         28   8.9  

>02_04_0255 - 21323382-21323966
          Length = 194

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 87  LRRCNYGFSSTLFYRWLATKSKCKL 13
           LRRC +GF +     WL + S C L
Sbjct: 126 LRRCGHGFHAECVDMWLGSHSTCPL 150


>12_01_0085 - 689489-689935
          Length = 148

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 87  LRRCNYGFSSTLFYRWLATKSKCKL 13
           L  C + F     YRWLA ++ C L
Sbjct: 90  LAACRHEFHKECIYRWLANRNTCPL 114


>01_06_1454 + 37498513-37499154
          Length = 213

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 87  LRRCNYGFSSTLFYRWLATKSKC 19
           L RC +GF +    RWLA +  C
Sbjct: 161 LPRCGHGFHARCIDRWLAARQTC 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,352
Number of Sequences: 37544
Number of extensions: 249765
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)