Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F04
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    33   0.28 
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 396 NYVISTTHLIL---YALVFFVFSKHHIQXXXXXXXXXXXXIVFNSHLNF 533
           NY++ TTHL+L   Y L+F  F++ H              I+FNS + F
Sbjct: 87  NYLLITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILFNSFIAF 135


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 401 CYFHNSFNLICFSFLCIF*TSHSRIWLIFVIILFLHRVQQSLKFSLTFM 547
           C+F  +F  + ++ +C   TS   +W I ++ L  H++  S + +L+ M
Sbjct: 313 CWFITTFAFVTYNKVC---TSQYFVWYIVLLPLLAHKIMMSRQLALSLM 358


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 425 LICFSFLCIF*TSHSRIWLIFVIILFLHRVQQSLKFSLTFM 547
           + CFSF  IF   H  +   F +ILFL  +  SLK+  +F+
Sbjct: 101 IYCFSFFIIFYILHV-LQQTFHVILFLLAILNSLKYIFSFL 140


>Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical
           protein F36D3.6 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 653 VKFSYLYYFHLSKYWILFYLNIMC 724
           VKFS L   H + +WI FY NI+C
Sbjct: 48  VKFSMLV-MHFTIFWIDFYWNILC 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,052,829
Number of Sequences: 27780
Number of extensions: 290592
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)