Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_F02
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    30   1.2  
04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    29   2.0  
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    27   8.2  

>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 479 RYYNSRKFMPAGLMFCLSVGMFTKLLLKNVGASRMPIKS 363
           RYYN +K  P G     +V +FT++ LKN+  + +P+KS
Sbjct: 42  RYYNYQKGQPYGAG-ANNVEIFTRVPLKNMMPASVPLKS 79


>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 479 RYYNSRKFMPAGLMFCLSVG 420
           R YN+RK +P+GL+  LS+G
Sbjct: 140 RLYNTRKLVPSGLLLVLSLG 159


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 217 KFQIYFSHTVQSKLITKKHDFNNKKLYIQPIP 312
           KFQ YF  T+QS  ++K+HD +  +L   P+P
Sbjct: 515 KFQNYFESTIQS--LSKQHDLSQFRL--PPLP 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,526
Number of Sequences: 37544
Number of extensions: 206710
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)