Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_E21
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 168 7e-43
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 150 2e-37
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.4
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 7.2
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 26 7.2
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 26 7.2
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.5
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 168 bits (409), Expect = 7e-43
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 1/230 (0%)
Frame = -1
Query: 798 DIMDGSSVXRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFXKTNFRTNPNYIKMFELFNE 619
DIMD S RG PCWY P VG A ND+ ++ S+++ K +FR Y+ + ELF++
Sbjct: 96 DIMDASKTRRGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHD 154
Query: 618 TLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDE 442
++T +GQ LD +T + D S F+L + + LPV+L + LA
Sbjct: 155 VTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATP 214
Query: 441 KIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQ 262
+ K AQDI + +G FQ+QDD++DC+GD TGK+GTDI + KC+W+ AL +CT Q
Sbjct: 215 ENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQ 274
Query: 261 RTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 112
R + YG + +R+K ++E+L++ +++ E++ I + I+ +
Sbjct: 275 RVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 150 bits (364), Expect = 2e-37
Identities = 82/251 (32%), Positives = 130/251 (51%), Gaps = 3/251 (1%)
Frame = -1
Query: 798 DIMDGSSVXRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFXKTNFRTNPNYIKMFELFNE 619
DIMD S RG+ CWY VG+ A N+S L+ + + + FR P Y+ + + F E
Sbjct: 101 DIMDQSIKRRGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFRE 158
Query: 618 TLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDE 442
+ T +GQ D ++ + + SF L + + LP+ LLL+ N ++
Sbjct: 159 VTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQ 218
Query: 441 KIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQ 262
K Y + + +G FQ+QDD++DCFGD GKVG DIQ+ KCTWL A + + Q
Sbjct: 219 KAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQ 278
Query: 261 RTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RVL 88
+ +A YG + ++ IK+LY +L +P++Y E M D+I ++I+ I + +
Sbjct: 279 LNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCI 338
Query: 87 FKKLLDITYNR 55
F K + Y R
Sbjct: 339 FTKFFQLIYKR 349
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 405 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 229
IGT FQ+ DD +D + GK G D++ T + A ++ E + +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318
Query: 228 EPAHVERIKRLYE 190
P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 216 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 124
++R ++ E++H+PQ+Y + Y I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 423 QDICLEIGTMFQIQDDFIDCFGDE 352
Q +C+ IG M DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 1 NSGNKGFV*NILYYCL-MLPIVRNIQQLFKE--NAGGLYWYIFNLS 129
N G G V + + C+ ++P+ ++ +L +GGLY++IF L+
Sbjct: 76 NCGGGGMVWSWIIGCICLIPVSISLGELASSMPTSGGLYFWIFTLA 121
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 455 KMWMKKFINLLKTFAWK*ERCS 390
K +K+F NLLKTFA + ER +
Sbjct: 93 KRRIKRFRNLLKTFACRIERAN 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,422
Number of Sequences: 5004
Number of extensions: 67332
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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