Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E14
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545...    28   2.1  
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719           27   3.8  
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    26   6.6  
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    26   8.7  

>08_01_0627 +
           5451140-5451839,5452635-5452662,5452730-5452786,
           5453205-5453874
          Length = 484

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 37  HQLLSFRLFTXNLSLSXPSAVXSNYYFLXLLTNVHIFS 150
           H+L S +LF  NLS    +A+  N  FL  L   H F+
Sbjct: 350 HELSSLQLFANNLSNEGLTAILDNCPFLESLDIRHCFN 387


>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
          Length = 780

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 176 KYLTINKNYSQTLFPKHFSLLYNYTSLV 259
           +YL I++NY   + P+    LYN  +L+
Sbjct: 575 RYLDISRNYHVKVLPEDICTLYNLQTLI 602


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 179 YLTINKNYSQTLFPKHFSLLYNYTSL 256
           YL ++KN+ Q +FP   S L N ++L
Sbjct: 397 YLNLSKNFFQGIFPSAVSHLENLSTL 422


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 22  SIYLHHQLLSFRLFTXNLSLS 84
           +I+LHH+L S   F  N++LS
Sbjct: 348 NIFLHHKLKSLEAFCVNVALS 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,576,483
Number of Sequences: 37544
Number of extensions: 86571
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)