Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E14
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    20   9.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   9.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.4  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 167 KIYKYLTINKNYSQTLFPKHFSLLYNYTSLVELEFYFEIY 286
           KI   L+ N NYS      +  L YN   + ++     +Y
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINHIEQIPVPVPVY 119


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 99  RFKLLFFXFINKCT 140
           R  LLFF  ++ CT
Sbjct: 4   RILLLFFLLLSSCT 17


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 99  RFKLLFFXFINKCT 140
           R  LLFF  ++ CT
Sbjct: 4   RILLLFFLLLSSCT 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,989
Number of Sequences: 438
Number of extensions: 1431
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)