Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E13
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...   131   9e-32
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    28   1.2  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   2.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   3.7  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    27   3.7  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   8.6  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.6  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score =  131 bits (317), Expect = 9e-32
 Identities = 76/217 (35%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
 Frame = -1

Query: 675 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 499
           +IF   I ++A   +L +RSL+T+ ASA    PPVQ++GL+G YAS+L++AA K   LD 
Sbjct: 3   HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59

Query: 498 VEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 319
           VEK L +    ++   + +++I +P L R  K   +  +       P   N   +L +N 
Sbjct: 60  VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119

Query: 318 RLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAK 139
           RL  L  +   F  +M A RGE+  ++ +A PLD      LE+ + K   G   L ++ K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNK 179

Query: 138 VDPSLIGGMVVSIGDKYVDMSVASKVKKYTELISAAV 28
           V PS+IGG++V IGD  +D+SV S++    +L+S  +
Sbjct: 180 VTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 223 WFGCNNFTSYFTPVGSHHNLKSINDSLQFVQATI 324
           W G  +F + F  + +H  + S+N  L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 399 DALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTC 244
           +AL    N+I  + T  + LGL+    RL  +         +MA H G + C
Sbjct: 5   EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 163 IALQEFLKRCFQILPLCLI--*WFGCNNFTS 249
           I  Q FL+ CF +L LC I   WF    F S
Sbjct: 26  ILQQRFLRACFALLCLCCITSYWFSSGPFIS 56


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 206 LCA*SSGLAVTTSQVTSPRWAAIIILKALMTASSLS-KRPFSASNPSR 346
           LC  +S LA      + P WAA++++ A   AS  S  RP+ +  P++
Sbjct: 54  LCLTNSDLAQLPEVQSLPSWAALLLVMATENASPNSFWRPYLSIFPTK 101


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 320 PFSASNPSRLPVVGERLILLATCFNASTFML 412
           PFS    S+LPV G   ILL   F  +T+++
Sbjct: 3   PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 534  KERKHTDLPIQILALEVLPFVLRR 605
            KER+   L ++ +  +VLPF+LRR
Sbjct: 1570 KERERGTLALEAIHKQVLPFMLRR 1593


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 386  CFNASTFMLLFNVGLMMNSLSF-ASVLID 469
            C     F+LL   GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 29  TAALISSVYFLTLLATLMST 88
           TA   SS+Y+  LLATL+ST
Sbjct: 303 TAVGTSSIYYSFLLATLLST 322


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 387 HVANKISLSPTTGNLLGLLAENGRLDKLEAV 295
           ++ + +S+ P TGN   +   NG+ + LEA+
Sbjct: 214 NLTDAVSIEPGTGNKFTINFNNGKSETLEAL 244


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 648 ALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQ 469
           +LK  +   S+ +  A+   VKP  ++   E R      SAA  +   DIV  +    +Q
Sbjct: 272 SLKSTIFFLSIPSLEATPITVKPESEMGDWESRNVWKEVSAALASGNYDIVSSKKSTIEQ 331

Query: 468 SIKTDAKLKE 439
           S + D + KE
Sbjct: 332 S-QRDMRKKE 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,689
Number of Sequences: 5004
Number of extensions: 61634
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)