Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E11
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   2.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   8.2  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 517 RYVCSFTAGSQQTNSVHGICACSGAATVFRR 609
           R++ + ++  + T SVH IC CS  +T+F R
Sbjct: 227 RFIHTLSSLIKCTTSVHLICMCSVPSTLFSR 257


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 254 VAATPALSSIREDFMLFIMCI*YSMFRRFNRFV 156
           +A+TP +S + ED+++ +    YSMF+   + +
Sbjct: 588 IASTP-MSKLYEDYLVMLFAFHYSMFQVMTKLI 619


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 294 APLRPYRVCRVGER 253
           APL P   CRVGER
Sbjct: 103 APLNPIDACRVGER 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,474
Number of Sequences: 5004
Number of extensions: 51086
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)