Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E11
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    45   5e-05
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    29   3.3  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    29   3.3  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    29   3.3  
Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical protein
            K11D9.2a protein.
          Length = 1059

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -1

Query: 717  EWVTVMKFSVPVVLXDEVLKFVARKISDAQP 625
            EW+ V+K S+PV+L DE+LKF+AR   D +P
Sbjct: 967  EWIAVLKISLPVLLLDEILKFIARNYIDGKP 997


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1059

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -1

Query: 717  EWVTVMKFSVPVVLXDEVLKFVARKISDAQP 625
            EW+ V+K S+PV+L DE+LKF+AR   D +P
Sbjct: 967  EWIAVLKISLPVLLLDEILKFIARNYIDGKP 997


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical protein
            K11D9.2b protein.
          Length = 1004

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -1

Query: 717  EWVTVMKFSVPVVLXDEVLKFVARKISDAQ 628
            EW+ V+K S+PV+L DE+LKF+AR   D +
Sbjct: 967  EWIAVLKISLPVLLLDEILKFIARNYIDVE 996


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 511 PCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPR 624
           PC  VC   A    T   +G+ AC G  T FRR+ L +
Sbjct: 36  PCCLVCGRVAN---TGHHYGVTACLGCKTFFRRVVLQK 70


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 511 PCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPR 624
           PC  VC   A    T   +G+ AC G  T FRR+ L +
Sbjct: 36  PCCLVCGRVAN---TGHHYGVTACLGCKTFFRRVVLQK 70


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 511 PCRYVCSFTAGSQQTNSVHGICACSGAATVFRRLQLPR 624
           PC  VC   A    T   +G+ AC G  T FRR+ L +
Sbjct: 36  PCCLVCGRVAN---TGHHYGVTACLGCKTFFRRVVLQK 70


>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 380 VPHPLLSATSTALVSRCNNRMAFSVYVASR--RCDRTVYVVSESVAA 246
           +  P+ SAT+    +R  +R  FSV++  R  RCD   + + E + A
Sbjct: 240 ISKPIASATAAIAQNRKTSRSFFSVFINGRSVRCDILKHPIDEVLGA 286


>Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.10 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 393 RLPLVNDHLVRWKTTRALVSPALDRRLWSELTGSYADITTVSLR 524
           R+PLV     RWK  R L SP    +   ++ G+  +  T  +R
Sbjct: 114 RVPLVAAQGHRWKRLRTLASPTFSNKSLRKIMGTVEESVTELVR 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,027
Number of Sequences: 27780
Number of extensions: 304190
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)