Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E07
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   1.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   2.7  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   3.6  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    24   4.7  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    24   4.7  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   6.3  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 237 NKLPFCDDQEF*FAGQQHIRC--*CFSTRRD 151
           N  PFC D  +    QQH +C   C  +R+D
Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 5    YYFANKIIFPLHYVLLLSSPIRAL-XLRAVGEPSFLATK 118
            YYFA+  + P+H ++ L   I A   L+     SFL  K
Sbjct: 1076 YYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNK 1114


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 144 CGGRNISLYLVARKEGSPTARSXKARIGEDSS 49
           C G  ++ + V +KEG  ++ S      EDSS
Sbjct: 300 CSGTELAFWPVDQKEGDESSSSDNLDSDEDSS 331


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 157 ARWRLWRSEHFSLLGGKKGR 98
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 157 ARWRLWRSEHFSLLGGKKGR 98
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 287 VPCKVFHHNHCRFSLPQINCHFAMTKNSNSQ 195
           V CK F  N CR+     NC    T  SN Q
Sbjct: 2   VVCKYFLQNRCRYG---TNCKNQHTVPSNGQ 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,240
Number of Sequences: 5004
Number of extensions: 22545
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)