Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_E07
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 32 0.11
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 30 0.33
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 30 0.33
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 29 0.58
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 29 1.0
02_05_0979 + 33268294-33269595 28 1.3
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 28 1.3
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 27 2.3
04_03_0314 - 14238620-14240128 27 2.3
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 3.1
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 27 3.1
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 27 4.1
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 26 7.1
01_01_0150 - 1344247-1345011 26 7.1
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 25 9.4
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 192 ALRIRILGHRKMA-IYLWQRKTTMIVMEHFARYRFIGRPNSF 314
A+ + ILG + I+LW++K + +E Y +GRPN F
Sbjct: 535 AIGVTILGLVALVGIFLWRKKRRKLSLEQQELYSIVGRPNIF 576
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 228 AIYLWQRKTTMIVMEHFARYRFIGRPNSF 314
AI+LW +K + +E Y +GRPN F
Sbjct: 615 AIFLWMQKRRKLSLEQQELYCIVGRPNVF 643
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 30.3 bits (65), Expect = 0.33
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 225 MAIYLWQRKTTMIVMEHFARYRFIGRPNSF 314
+ I++W++K + +E Y +GRPN F
Sbjct: 554 VGIFMWRQKRRKLTLEQQELYSIVGRPNVF 583
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 225 MAIYLWQRKTTMIVMEHFARYRFIGRPNSF 314
+ I++W++K + +E Y +GRPN F
Sbjct: 590 VGIFMWRQKRRKLSLEQQELYSIVGRPNVF 619
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 234 YLWQRKTTMIVMEHFARYRFIGRPNSF 314
++W++K I++E Y +GRPN F
Sbjct: 548 FIWRQKKRKILLELEELYNIVGRPNVF 574
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 87 RWGNLPFLPPSKEKCSDRHNRHRA*C*SISSGCVAALRIRILGHRKMAIYLWQRKTTMIV 266
+W +L PP +E + RH H S C + ++I GH YLW T I+
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHIL 151
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 35 LHYVLLLSSPIRALXLRAVGEPSFLATK*REMFRPPQPPSRL 160
L ++LL ++ +R + A G+ SF A + PP PP R+
Sbjct: 170 LVFLLLAAAGLRVVPFLASGDVSFAAPVPAAVVYPPPPPPRI 211
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 127 NVPTATTAIAPSAKALAADVL 189
++PT TTA +P+ KAL D+L
Sbjct: 25 HLPTTTTAASPALKALGEDLL 45
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 112 HQVKRNVPTATTAIAPSAKALAADV 186
H + N+ T A+ P+A+ALAAD+
Sbjct: 145 HPLSPNLSTLAVALTPAAEALAADL 169
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 78 SSVRWGNLPFLPPSKEKCSDRHNRHRA 158
S +RW FLPPS + SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 198 RIRILGHRKMAIYLWQRKTTMIVMEHFARYRFIGRPNSF 314
R RIL H K A W ++ ++ E + + RP+SF
Sbjct: 116 RQRILNHYKSAAGSWYKRAQLVGQEPLHKELYKMRPSSF 154
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 171 CFSTRRDGGCGG 136
C RRDGGCGG
Sbjct: 87 CLHRRRDGGCGG 98
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 130 VPTATTAIAPSAKALAA 180
VPTATTA AP+A AA
Sbjct: 123 VPTATTASAPAAAVTAA 139
>01_01_0150 - 1344247-1345011
Length = 254
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 34 AALCSATIFADSRLXAPCGGGTFLSC 111
+A C + A + +PCGGG L C
Sbjct: 68 SAACKECVAAPAAGDSPCGGGAALVC 93
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 145 LWRSEHFSLLGGKKGRFPHR 86
LW EHF L G + PHR
Sbjct: 67 LWSIEHFGLRTGLRRPLPHR 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,620,106
Number of Sequences: 37544
Number of extensions: 185251
Number of successful extensions: 551
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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