Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E06
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    31   0.18 
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    27   2.8  
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/17 (64%), Positives = 17/17 (100%)
 Frame = -1

Query: 301  YSISQTTLEQIFLQFTK 251
            YS+SQTTLEQ+F++F++
Sbjct: 1741 YSLSQTTLEQVFIEFSR 1757


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
            C48B4.4c protein.
          Length = 1704

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 134  LNWYKCQTNQWLLKQFHFCYFTI 202
            +NW  C  N WL+  F  C F +
Sbjct: 1300 MNWDHCGKNAWLMGTFGVCSFAL 1322


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
            C48B4.4b protein.
          Length = 1691

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 134  LNWYKCQTNQWLLKQFHFCYFTI 202
            +NW  C  N WL+  F  C F +
Sbjct: 1287 MNWDHCGKNAWLMGTFGVCSFAL 1309


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
            C48B4.4a protein.
          Length = 1689

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 134  LNWYKCQTNQWLLKQFHFCYFTI 202
            +NW  C  N WL+  F  C F +
Sbjct: 1285 MNWDHCGKNAWLMGTFGVCSFAL 1307


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
            cassette transporter protein.
          Length = 1704

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 134  LNWYKCQTNQWLLKQFHFCYFTI 202
            +NW  C  N WL+  F  C F +
Sbjct: 1300 MNWDHCGKNAWLMGTFGVCSFAL 1322


>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical protein
            F22E10.1 protein.
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 195  LLSLNNKYYNLIHKPSL 245
            L+SL  KYYNLI K  L
Sbjct: 1300 LMSLRGKYYNLIKKQDL 1316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,500,968
Number of Sequences: 27780
Number of extensions: 136860
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)