Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E05
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   168   9e-43
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    79   1e-15
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    73   4e-14
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    48   2e-06
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.4  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   5.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   7.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  168 bits (408), Expect = 9e-43
 Identities = 73/90 (81%), Positives = 84/90 (93%)
 Frame = -3

Query: 816 KXSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 637
           K S+YFVEWIP+NV  AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFL
Sbjct: 336 KNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFL 395

Query: 636 HWYTGEGMDEMEFTEAESNMNDLVSEYQQY 547
           HWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
 Frame = -3

Query: 816 KXSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTA 661
           K +  FV+W P   K  +CD PP+ ++         A   + N+T+I E + R+  +F  
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397

Query: 660 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 550
           M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
 Frame = -3

Query: 801 FVEWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQELFKRISEQFTAMFRRK 646
           FV+W P   K  +C  PP+ +          A   + N+T+I E + R+  +F  M+ ++
Sbjct: 347 FVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 406

Query: 645 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 550
           AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 407 AFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
 Frame = -3

Query: 801 FVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 631
           F+ W P +++ A+    P      +++   + N T+I  LFKR  +Q+  + +R AFL  
Sbjct: 348 FIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQ 407

Query: 630 YTGEGMDEMEFTEAESNMN---DLVSEYQ 553
           Y  E + E +  E +S+ +   DL++EY+
Sbjct: 408 YKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 336 KLPVMTNYLNEHNLFNTFLDIPPGLVE 256
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 714 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 607
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 299 ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVPF 120
           + S+H +   Q+ + ARS    G   +  F  H   + +K  + +S P +  +T+TP P 
Sbjct: 631 LASLHDMRKSQSPICARSATSAG---LPRFEYHT--SLSKSLEHSSTPASLQATKTPSPS 685

Query: 119 Y 117
           +
Sbjct: 686 F 686


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 158  VSNFDPPFCFCCTYYVNKK 214
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,050
Number of Sequences: 5004
Number of extensions: 55302
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)