Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E03
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   2.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    26   4.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.4  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 602 IDDKKN*IILFWASWLGY 655
           +DDKK+ ++ F+A W GY
Sbjct: 155 MDDKKDVLVEFYADWCGY 172


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 185 ET*RILVISPITR--YLYNAISCPSCNKRLYHIA 280
           ET R ++++ I    YL N ISCPS +   +HI+
Sbjct: 13  ETRRQIILTIINSLVYLVNFISCPSIHSIPFHIS 46


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 380  VIVYPLYRKAEITTEANREGPTSALYDK 463
            VI  PLY+K E+      +GP SA + +
Sbjct: 1580 VIAIPLYQKKEVFAILYLQGPPSAFHSR 1607


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 604 NLFKRFPLIFIPKSNDPHHNDLNLTIILCYSSNPLL*HGRFV 479
           N FK    + IP SN  H   + L +    +  P+L H  F+
Sbjct: 434 NFFKELIEVNIPTSNTMHERHIRLLVSYLSNRFPILLHFPFL 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,960
Number of Sequences: 5004
Number of extensions: 53060
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)