Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E03
         (733 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04621-1|AAA52701.1|  397|Homo sapiens HSPG1 protein.                  31   4.3  
BC049836-1|AAH49836.1|  201|Homo sapiens syndecan 2 protein.           31   4.3  
BC030133-1|AAH30133.1|  201|Homo sapiens syndecan 2 protein.           31   4.3  
AK025488-1|BAB15150.1|  201|Homo sapiens protein ( Homo sapiens ...    31   4.3  

>J04621-1|AAA52701.1|  397|Homo sapiens HSPG1 protein.
          Length = 397

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 LLKFLSYFFHFKVIVYPLYRKAEITTEANREGPTSALYDKAPT 472
           ++ FL   F   ++VY + +K E + +     P+SA Y KAPT
Sbjct: 350 VIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPT 392


>BC049836-1|AAH49836.1|  201|Homo sapiens syndecan 2 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 LLKFLSYFFHFKVIVYPLYRKAEITTEANREGPTSALYDKAPT 472
           ++ FL   F   ++VY + +K E + +     P+SA Y KAPT
Sbjct: 154 VIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPT 196


>BC030133-1|AAH30133.1|  201|Homo sapiens syndecan 2 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 LLKFLSYFFHFKVIVYPLYRKAEITTEANREGPTSALYDKAPT 472
           ++ FL   F   ++VY + +K E + +     P+SA Y KAPT
Sbjct: 154 VIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPT 196


>AK025488-1|BAB15150.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21835 fis, clone HEP01602. ).
          Length = 201

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 LLKFLSYFFHFKVIVYPLYRKAEITTEANREGPTSALYDKAPT 472
           ++ FL   F   ++VY + +K E + +     P+SA Y KAPT
Sbjct: 154 VIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPT 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,518,470
Number of Sequences: 237096
Number of extensions: 1713485
Number of successful extensions: 2031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)