Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E03
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 426 RTEKVLRARCTIKLPQRGTNLPC 494
           RTE+++ AR T  +P    +LPC
Sbjct: 431 RTEELIWARGTKDIPISACSLPC 453


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 426 RTEKVLRARCTIKLPQRGTNLPC 494
           RTE+++ AR T  +P    +LPC
Sbjct: 521 RTEELIWARGTKDIPISACSLPC 543


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 252 EGHEIALYRYRVIGEIT 202
           EG +I+ Y++R I EIT
Sbjct: 366 EGEDISDYKFRHITEIT 382


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 380 VIVYPLYRKAEITTEANREGPTSALYDKAPTTRDESS 490
           ++ Y LY K   T E       S    K+P +RD S+
Sbjct: 61  ILEYELYIKYSHTHEKKLVLERSKTKSKSPESRDRSN 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,389
Number of Sequences: 438
Number of extensions: 4756
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)