Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_E02
(348 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein. 67 1e-11
BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25 p... 67 1e-11
BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25 p... 67 1e-11
BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25 p... 67 1e-11
AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25 p... 67 1e-11
Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,... 29 3.0
BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein pr... 29 3.0
BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein. 29 3.0
BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 3... 29 3.0
AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 3... 29 3.0
AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 3... 29 3.0
AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 3... 29 3.0
AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens ... 29 5.3
Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V) pr... 28 7.0
X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for ... 28 7.0
M11718-1|AAA52058.1| 270|Homo sapiens COL5A2 protein. 28 7.0
BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein. 28 7.0
BC043613-1|AAH43613.1| 503|Homo sapiens COL5A2 protein protein. 28 7.0
AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen a... 28 7.0
AC133106-1|AAY24185.1| 503|Homo sapiens unknown protein. 28 7.0
AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen... 28 7.0
BC115387-1|AAI15388.1| 1157|Homo sapiens DUSP27 protein protein. 28 9.3
AL158837-4|CAH69958.1| 1158|Homo sapiens novel protein protein. 28 9.3
AF119045-1|AAK02011.1| 661|Homo sapiens unknown protein. 28 9.3
>M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein.
Length = 125
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -3
Query: 196 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVXERLKVRG 83
LNN VLFDK TY+KL KEVP YKLITPAVV ERLK+RG
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRG 81
>BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -3
Query: 196 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVXERLKVRG 83
LNN VLFDK TY+KL KEVP YKLITPAVV ERLK+RG
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRG 81
>BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -3
Query: 196 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVXERLKVRG 83
LNN VLFDK TY+KL KEVP YKLITPAVV ERLK+RG
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRG 81
>BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -3
Query: 196 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVXERLKVRG 83
LNN VLFDK TY+KL KEVP YKLITPAVV ERLK+RG
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRG 81
>AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = -3
Query: 196 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVXERLKVRG 83
LNN VLFDK TY+KL KEVP YKLITPAVV ERLK+RG
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRG 81
>Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein
protein.
Length = 228
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 133 NLSLLTADLYSLFCGLFLFHYKFSGL 158
>BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 96 NLSXTTAGVISLYCGTSLYSFSYVGL 173
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ39715 fis, clone SMINT2013228. ).
Length = 120
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 VGLPCTVSHMWVYQTTPGCSTCH---ELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSR 306
+GL T +H W Y+ P CS C+ ++++ T H P S + V +P+
Sbjct: 20 LGLLHTHTHTWYYRCEPTCSACYTHTNIYIFKTEF-----HSYCPGWSAMRDLVSLQPAT 74
Query: 307 PSWAASL--NW 333
+ SL NW
Sbjct: 75 SASCLSLPSNW 85
>Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V)
protein.
Length = 1496
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 1445 DTCSKRNGNVGKTVFEYRTQ 1464
>X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for
pro-alpha 2 (V) collagen chain. ).
Length = 1099
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 1048 DTCSKRNGNVGKTVFEYRTQ 1067
>M11718-1|AAA52058.1| 270|Homo sapiens COL5A2 protein.
Length = 270
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 219 DTCSKRNGNVGKTVFEYRTQ 238
>BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein.
Length = 1139
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 1088 DTCSKRNGNVGKTVFEYRTQ 1107
>BC043613-1|AAH43613.1| 503|Homo sapiens COL5A2 protein protein.
Length = 503
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 452 DTCSKRNGNVGKTVFEYRTQ 471
>AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen alpha
2 chain protein.
Length = 1347
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 1296 DTCSKRNGNVGKTVFEYRTQ 1315
>AC133106-1|AAY24185.1| 503|Homo sapiens unknown protein.
Length = 503
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 452 DTCSKRNGNVGKTVFEYRTQ 471
>AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen
preproprotein variant protein.
Length = 1502
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 58 DXCSSRQGNLGPLIFQXRQQ 117
D CS R GN+G +F+ R Q
Sbjct: 1451 DTCSKRNGNVGKTVFEYRTQ 1470
>BC115387-1|AAI15388.1| 1157|Homo sapiens DUSP27 protein protein.
Length = 1157
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 250 RILPSSSVFFEAVWPKPSRPSWAASLNWKAI 342
R P SS E+ P+P RP+WA S +W+ +
Sbjct: 1043 RRTPESSEREES--PEPQRPNWARSRDWEDV 1071
>AL158837-4|CAH69958.1| 1158|Homo sapiens novel protein protein.
Length = 1158
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 250 RILPSSSVFFEAVWPKPSRPSWAASLNWKAI 342
R P SS E+ P+P RP+WA S +W+ +
Sbjct: 1043 RRTPESSEREES--PEPQRPNWARSRDWEDV 1071
>AF119045-1|AAK02011.1| 661|Homo sapiens unknown protein.
Length = 661
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 250 RILPSSSVFFEAVWPKPSRPSWAASLNWKAI 342
R P SS E+ P+P RP+WA S +W+ +
Sbjct: 546 RRTPESSEREES--PEPQRPNWARSRDWEDV 574
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,321,480
Number of Sequences: 237096
Number of extensions: 1250087
Number of successful extensions: 2941
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2940
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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