Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_E02
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    64   3e-11
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.69 
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    28   2.1  
U41264-6|AAA82426.1|  437|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   4.9  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   4.9  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   4.9  
Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    26   6.4  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   6.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 37/79 (46%), Positives = 40/79 (50%)
 Frame = -3

Query: 322 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 143
           MPPKKD K     P                            LNN VLFD+ TY+KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57

Query: 142 VPQYKLITPAVVXERLKVR 86
           V  YKLITP+VV ERLKVR
Sbjct: 58  VITYKLITPSVVSERLKVR 76


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 311 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 210
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 62
            protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 341  IAFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 207
            +AFQ +++ QE        A  NT ++     + SQ  EVV ++S
Sbjct: 1076 MAFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120


>U41264-6|AAA82426.1|  437|Caenorhabditis elegans Hypothetical
           protein F10E7.10 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 10  PCXLDSLFDAPFFPKLDXCSSRQGNLGP 93
           P  L   FDAP  PK +    +QG  GP
Sbjct: 139 PLQLSPQFDAPVMPKCNYSIRKQGKDGP 166


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 270 RRRRKDPVAAKPRRRSGP 217
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 270 RRRRKDPVAAKPRRRSGP 217
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = +1

Query: 139 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 258
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.6 protein.
          Length = 479

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 38  RPFSLSSMXAL-LARVTSDL*SFXYDSRCD*LVLWDFLVQFLICGFI 175
           RP  ++S+  L L  +      F YDS  D  + W FL  F++  F+
Sbjct: 343 RPLLITSLLVLALINIFMMSLVFLYDSTKDSFLAWPFLALFVLFTFV 389


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 190 NQVLFDKPTYEKLYKEVPQYKLITPAVVXERLK 92
           N +LFD+   EKL++++ +  +  P  V E+L+
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLE 726


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 268 SVFFEAVWPKPSR 306
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 285 SLKKHRRRRKDPVAAKPRRRSGPKEK 208
           S  +  RRR+ P AA PRRR  P+ +
Sbjct: 473 SKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 190 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRP 309
           C    + F+     +  C   +LP+ S+  E   PKP RP
Sbjct: 44  CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,111,399
Number of Sequences: 27780
Number of extensions: 163799
Number of successful extensions: 538
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)