Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D19
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    29   0.90 
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   3.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   4.8  

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 695 SDNFRVVARSTNEKKKVETVA*VNRNK 615
           SD+  V  RST+EK+KVE+V  V+ +K
Sbjct: 49  SDSKNVDGRSTSEKRKVESVKLVDESK 75


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 268 IFDIELICVNIWYHQDFSH 212
           ++DI  +C+  W+H  FSH
Sbjct: 151 VYDIYTLCLVSWHHHVFSH 169


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 130 INFVNSSQNIDKVK---TKTKTKLRSFDSIYEKNP 225
           I+ +NS  N+DKVK     + +  ++FDS  EK P
Sbjct: 149 ISILNSLDNLDKVKYLLHDSSSLTKAFDSYKEKRP 183


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 396 LSILVIVYLEPVRKYFFSCYKT*KMTLYFLCCLFALK 286
           L + +I+Y + +  +FF C K    +L F C LF+ K
Sbjct: 27  LIMFLILYSQEILSFFFMCSKFSMNSLKF-CVLFSFK 62


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 412 ASKKNVVNISNCIFRASQKIFFLML*DIEDDPIFPMLPFRIKSVQFPKIFDIEL 251
           A +    N+SN +F+A   I  ++   I D+ I+P+L  R  ++ F  I  I L
Sbjct: 384 AGQMQTGNVSNDLFQAFDSIALIIFIPICDNIIYPLL--RKYNIPFKPILRITL 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,536
Number of Sequences: 5004
Number of extensions: 47573
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)