Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D16
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    79   6e-16
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    30   0.37 
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   1.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   2.0  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   8.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   8.0  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 48/120 (40%), Positives = 64/120 (53%)
 Frame = -2

Query: 858 IVVFVGSPVNTDEKELVKLAXRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTG 679
           IV FVGSP+  DEK L++LA R+KK  V  D++  GE  +N   L  F++  N  D+   
Sbjct: 110 IVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGE-LQNESALQHFIDAANSSDS--- 165

Query: 678 GSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXPFEFGVDPNVDPELALALRVSM 499
             HLVS+P       S  L++                  FE+GVDPN+D ELALAL +SM
Sbjct: 166 -CHLVSIPP------SPQLLSDLVNQSPIGQGVVASQNQFEYGVDPNLDVELALALELSM 218


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -2

Query: 369 DAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLEN 214
           D +ELS+EE +AL  + S  +E   AEE++  +EE +    D    + + +N
Sbjct: 62  DELELSDEELVAL--ESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 777 VNCDVVSFGEDSENNPLLTTFVNTLNG 697
           VN ++VS  ED++    L TF+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 6   IGISTLSCSSVEAYKHVSIQKKMKK*INLILFSM-WILFRLCLS 134
           +G   L+C S+  +    + KK +  INL  FS  +IL+ L +S
Sbjct: 820 VGAPILTCISIPLFSFEPLSKKNRFLINLFRFSFSFILYNLLIS 863


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 843 GSPVNTDEKELVKLAXRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 700
           GS ++ DE          +++  N D+++F    +N PLLT  +++L+
Sbjct: 4   GSKLSEDETFSQTFNEEEQEDSRNKDILAFDPSVDNEPLLTKKLSSLS 51


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 360 ELSEEEQIALAMQMSMQQ 307
           EL+E+EQI LAM++S+ +
Sbjct: 644 ELNEQEQIELAMRLSLME 661


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 744 SENNPLLTTFVNTLNGKDTSTGGSHLVSVP 655
           S++NP    F N+L G D  T GS +   P
Sbjct: 93  SKDNPQNNDFTNSLQGLDFGTFGSRIQREP 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,036
Number of Sequences: 5004
Number of extensions: 56708
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)