Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D16
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    64   1e-10
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519...    32   0.69 
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    32   0.69 
12_02_0189 + 15165485-15168694                                         29   3.7  
01_06_0065 + 26107522-26107700,26110875-26111253                       29   6.4  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 49/123 (39%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
 Frame = -2

Query: 858 IVVFVGSPVNTDEKELVKLAXRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTG 679
           IVVFVGSPV  DEK L  +  +LKK  V+ DVV FGE  +  P        L     + G
Sbjct: 112 IVVFVGSPVK-DEK-LETIGKKLKKYNVSLDVVEFGESDDEKP------EKLEALVAAVG 163

Query: 678 GS-HLVSVPAGG---CVVLSEALITSXXXXXXXXXXXXXXXXPFEFGVDPNVDPELALAL 511
           GS H+V +P G     V+ +  +IT                  +E+ VDPNVDPE A AL
Sbjct: 164 GSSHIVHIPPGEDLRAVLANTPIITGDEGGGAAAGGASR----YEYNVDPNVDPEFAEAL 219

Query: 510 RVS 502
           R+S
Sbjct: 220 RLS 222



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 561 FEFGVDPNVDPELALALRVS 502
           +E+ VDPN DPELA   R++
Sbjct: 237 YEYSVDPNADPELAETFRLA 256


>10_08_0799 -
           20650799-20650947,20651022-20651114,20651906-20651934,
           20652039-20652097,20652170-20652283,20652374-20652534,
           20652544-20652663,20652741-20653469,20654980-20655244
          Length = 572

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 318 SMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRN---AMSTI 160
           +M    PQ  + +D + + A V+NDP+ L+  LE     +   E +RN   AMS I
Sbjct: 193 NMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNI 248


>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
            1772689-1772747,1772816-1772929,1773030-1773238,
            1773347-1774087,1775678-1776238,1776295-1776419,
            1778187-1778317,1779020-1779178,1779471-1779728,
            1780140-1780164,1780531-1780592,1780944-1781003,
            1781112-1781219,1781703-1781838,1781880-1781929,
            1782024-1782096,1782209-1782345,1782441-1782527,
            1782624-1782721,1783259-1783369,1783685-1783769,
            1783880-1783969
          Length = 1259

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 300  PQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRN---AMSTI 160
            PQ  E +D + + A V+NDP+ L+  +E     +   E +RN   AMS I
Sbjct: 900  PQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNI 949


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 491 KDNVKKKSLVVNRPQPKVKLALPLKEQIQ 405
           K ++  K +V  +P PK +L LPLKE ++
Sbjct: 464 KPSLNAKVMVPEKPVPKAELMLPLKENLR 492


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 670 PCVCASWRLCC 638
           PC C +WRLCC
Sbjct: 20  PCPCPAWRLCC 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,780
Number of Sequences: 37544
Number of extensions: 374860
Number of successful extensions: 921
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)