Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_D16
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-11|AAK66019.1| 346|Caenorhabditis elegans Proteasome r... 110 1e-24
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 3.3
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr... 28 7.5
U29244-19|AAC71098.1| 95|Caenorhabditis elegans Hypothetical p... 28 7.5
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 28 7.5
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 28 7.5
AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical ... 28 10.0
AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical ... 28 10.0
>AF067211-11|AAK66019.1| 346|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 10 protein.
Length = 346
Score = 110 bits (265), Expect = 1e-24
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 17/245 (6%)
Frame = -2
Query: 870 HQMXIVVFVGSPVNTDE-KELVKLAXRLKKEKVNCDVVSFGE-DSENNPLLTTFVNTLNG 697
H+M +V+F+GSP+ E ELVK+A ++KKEKV CDV+ FGE +S+ + +TFV+TLNG
Sbjct: 105 HKMRVVLFIGSPLEEIEMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNG 164
Query: 696 KDTSTGGSHLVSVPAGGCVVLSEALITS---XXXXXXXXXXXXXXXXPFEFGVDPNVDPE 526
K+ S GS L+ VP G L++AL+ S FG+D DP+
Sbjct: 165 KEGS--GSSLIVVPQGSS--LTDALLQSSVCKNEDGQAAFGGGGNGMDNAFGMDVENDPD 220
Query: 525 LALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXGADTAVERAIAMSLGRDAMELSEE 346
LALALRVSM A AV M +G ++EE
Sbjct: 221 LALALRVSMEEERARQAAAAAANGGAADSGADAEVAAAAAAVPLE-EMDMG----AMTEE 275
Query: 345 EQIALAMQMSMQQEAPQAE-----ESMDV-------SEEYAEVMNDPAFLQSVLENLPGV 202
+Q+ A+++SMQ+ AP + E MDV + ++MN+P LQ ++++LP
Sbjct: 276 QQLEWALRLSMQENAPAEQPQVQHEQMDVDGAPAVGGDNLDDLMNNPELLQQIVDDLPAA 335
Query: 201 DPQSE 187
+ + +
Sbjct: 336 NAEKD 340
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 360 ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 184
E++ + Q+ S+ QE P S+D ++ E V N L+++L NLP DP ++
Sbjct: 3366 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 3422
Query: 183 IR 178
+R
Sbjct: 3423 LR 3424
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 360 ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 184
E++ + Q+ S+ QE P S+D ++ E V N L+++L NLP DP ++
Sbjct: 4269 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 4325
Query: 183 IR 178
+R
Sbjct: 4326 LR 4327
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 360 ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 184
E++ + Q+ S+ QE P S+D ++ E V N L+++L NLP DP ++
Sbjct: 5223 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 5279
Query: 183 IR 178
+R
Sbjct: 5280 LR 5281
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 360 ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 184
E++ + Q+ S+ QE P S+D ++ E V N L+++L NLP DP ++
Sbjct: 6126 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 6182
Query: 183 IR 178
+R
Sbjct: 6183 LR 6184
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 360 ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 184
E++ + Q+ S+ QE P S+D ++ E V N L+++L NLP DP ++
Sbjct: 7029 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 7085
Query: 183 IR 178
+R
Sbjct: 7086 LR 7087
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 360 ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 184
E++ + Q+ S+ QE P S+D ++ E V N L+++L NLP DP ++
Sbjct: 7932 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 7988
Query: 183 IR 178
+R
Sbjct: 7989 LR 7990
>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
M03A8.2 protein.
Length = 2275
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -2
Query: 408 TAVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQ 229
TA +I RDA +EE+I +QM+ E + E + E+ + D F Q
Sbjct: 1736 TASAVSIGKIFERDAHSDEDEEEIIDPIQMAAALEIRELNEELGRIEQLEKKKTDDLFKQ 1795
Query: 228 SVLENLPGVDPQSEA 184
S + + +S A
Sbjct: 1796 SYSSSSSETESESSA 1810
>U29244-19|AAC71098.1| 95|Caenorhabditis elegans Hypothetical
protein ZK1248.17 protein.
Length = 95
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 777 VNCDVVSFGEDSENNPLLTT-FVNTLNG 697
V+CD +FG+D NN +T + NT +G
Sbjct: 58 VSCDAFAFGQDDTNNDRITVEWTNTPDG 85
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -2
Query: 312 QQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGV----DPQSEAIRNAMSTI 160
++E EE +++S+E E ++D A ++V+E DP+ +A +N+M I
Sbjct: 597 EEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASEAVEKDPKLKASKNSMDRI 651
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -2
Query: 312 QQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGV----DPQSEAIRNAMSTI 160
++E EE +++S+E E ++D A ++V+E DP+ +A +N+M I
Sbjct: 597 EEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASEAVEKDPKLKASKNSMDRI 651
>AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical
protein ZC123.4b protein.
Length = 536
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +1
Query: 535 YIGIYSKFERRQTRARRTCSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 687
+IG++ E + R +CS++ ++R ++ + HR SP R
Sbjct: 8 HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58
>AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical
protein ZC123.4a protein.
Length = 534
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +1
Query: 535 YIGIYSKFERRQTRARRTCSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 687
+IG++ E + R +CS++ ++R ++ + HR SP R
Sbjct: 8 HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,866
Number of Sequences: 27780
Number of extensions: 329952
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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