Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_D13
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 91 2e-19
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 46 9e-06
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 42 8e-05
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 39 8e-04
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 31 0.27
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 2.5
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 27 3.3
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 4.3
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 26 5.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.6
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.6
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 91.1 bits (216), Expect = 2e-19
Identities = 49/128 (38%), Positives = 81/128 (63%), Gaps = 4/128 (3%)
Frame = -2
Query: 831 ILVLQANRLTKIENLEQXNK-LDQLYISENGITAIENLENQTKLQTLDLAVNRITVIENV 655
+L +Q+NR+T+ ENL + L +LY+S NG+T+ +E L+ LD++ N I + +
Sbjct: 196 LLSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYL 255
Query: 654 RHMSDLEELWLNDNQITEWSSIE-YLQQNNKLSTIYLERNPI-ASDPA-YRRKLKILLPT 484
+ +L ELW ++N+++ + IE L KL T+Y E NP+ ++PA YR K+++ LP
Sbjct: 256 AGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLPQ 315
Query: 483 LHQIDATL 460
L QIDAT+
Sbjct: 316 LRQIDATI 323
Score = 69.3 bits (162), Expect = 6e-13
Identities = 38/99 (38%), Positives = 58/99 (58%)
Frame = -2
Query: 828 LVLQANRLTKIENLEQXNKLDQLYISENGITAIENLENQTKLQTLDLAVNRITVIENVRH 649
L L N + I N+ L+ L+ +N I IENLE +L L+L N+I VIEN+
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDT 168
Query: 648 MSDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNPI 532
+ +LE+LW+ N+IT++ + E LQ KLS + ++ N I
Sbjct: 169 LVNLEKLWVGKNKITKFENFEKLQ---KLSLLSIQSNRI 204
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/103 (33%), Positives = 55/103 (53%)
Frame = -2
Query: 834 EILVLQANRLTKIENLEQXNKLDQLYISENGITAIENLENQTKLQTLDLAVNRITVIENV 655
E L NR+ +IENLE ++L L + N I IENL+ L+ L + N+IT EN
Sbjct: 129 ENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENF 188
Query: 654 RHMSDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNPIAS 526
+ L L + N+IT++ ++ L ++ L +Y+ N + S
Sbjct: 189 EKLQKLSLLSIQSNRITQFENLACL--SHCLRELYVSHNGLTS 229
Score = 57.2 bits (132), Expect = 3e-09
Identities = 36/99 (36%), Positives = 56/99 (56%)
Frame = -2
Query: 828 LVLQANRLTKIENLEQXNKLDQLYISENGITAIENLENQTKLQTLDLAVNRITVIENVRH 649
L L+ N++ KIE++ + L +L + +N I IENL+N L LDL+ N I I N+ H
Sbjct: 67 LCLRQNQIKKIESVPET--LTELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINH 124
Query: 648 MSDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNPI 532
+ LE L+ N+I IE L+ ++L+ + L N I
Sbjct: 125 LKGLENLFFVQNRIRR---IENLEGLDRLTNLELGGNKI 160
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 45.6 bits (103), Expect = 9e-06
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = -2
Query: 798 IENLEQXNKL-DQLYISENGITAIENLENQTKLQTLDLAVNRITVI--ENVRHMSDLEEL 628
IENL + D + ++N I + N +LQTL NRIT I + + + +L+ L
Sbjct: 33 IENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTL 92
Query: 627 WLNDNQITEWSSIEYLQQNNKLSTIYLERNPIASDPAYRRKLKILLPTLHQID 469
L N + E + ++ L +L+ + NP+A YR L +P+LH +D
Sbjct: 93 SLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILD 145
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 42.3 bits (95), Expect = 8e-05
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = -2
Query: 828 LVLQANRLTKIEN-LEQXNKLDQLYISENGITAIENLEN--QTKLQTLDLAVNRITVIEN 658
L L N LT+I L + +L L ++ N IT + + LQ L L+ N +T +
Sbjct: 361 LDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLSG 420
Query: 657 VRHMSDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNP 535
+ ++ LE+L + DN IT+ L N YL NP
Sbjct: 421 LENVPSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSLNP 461
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 39.1 bits (87), Expect = 8e-04
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = -2
Query: 834 EILVLQANRLTKIENLEQXNKLDQLYISENGITAIENLENQTKLQTLDLAVNRITVIENV 655
+ L + N+L + L L +L + N + +++ +++ L L NRI +
Sbjct: 671 QYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRIKELSFT 730
Query: 654 R-HMSDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNPI----ASDP-AYRRKLKIL 493
++ LEEL L +N+I E I LQ L + L+ N + AS P + R L+I
Sbjct: 731 NSNLHRLEELLLGNNEIEEIEEISSLQ---NLMVLQLDNNKLTNLKASQPMIHLRILRIS 787
Query: 492 LPTLHQID 469
+HQ++
Sbjct: 788 NNAIHQLE 795
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 754 LREWYNSYRK-FGESNKTSDLGSGREQDHCYRKCSAYE 644
L YNS K F SN TS QDHCYRK +YE
Sbjct: 807 LNSVYNSSLKNFSSSNDTSVYHD--VQDHCYRKPQSYE 842
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -2
Query: 648 MSDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNP 535
+S L +WL + E +++YL+++ + +T+ LE+NP
Sbjct: 740 LSCLGRVWLQRGR--ESKNVDYLKESVRYATLALEKNP 775
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 769 RSTLYLREWYNSYRKFGESNKTSD 698
++++Y W++ FGESNK+ D
Sbjct: 669 KNSVYTSMWHSQESPFGESNKSGD 692
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/87 (22%), Positives = 44/87 (50%)
Frame = -2
Query: 798 IENLEQXNKLDQLYISENGITAIENLENQTKLQTLDLAVNRITVIENVRHMSDLEELWLN 619
+ +L + +K LYIS + TA E + K +D ++ +++ N+ + + + LWL
Sbjct: 44 LNDLSEISK--NLYIS-SWKTASELVSTSDK--GIDYTLSAMSINPNLS-VPEQQHLWLQ 97
Query: 618 DNQITEWSSIEYLQQNNKLSTIYLERN 538
+ + ++Y +++NK L +N
Sbjct: 98 IEDSSSQNILQYFEKSNKFIAFALSKN 124
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 591 IEYLQQNNKLSTIYLERNPIASDPAYRRKLKILLPTL 481
+EYL+ N+L TI E++P D + +K L P L
Sbjct: 158 VEYLKSQNRLITIDAEQDP---DAVFEDTVKALQPYL 191
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 396 TNISFTASSLIPIPRNKILIYTVSRRSGVVLEAISSIS 509
T T+SSL IP N + T S SG ++ S+ S
Sbjct: 703 TTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSS 740
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 335 KEEQFYINRLHGTNE*SQTVD*YFFYRIVSHPNTKK*NSYLHSV 466
K+E Y+ + +NE ++ + Y+ +S KK NS L V
Sbjct: 71 KQENIYVKHIKSSNEAKTELEIFNCYKEISISKEKKINSLLKLV 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,258
Number of Sequences: 5004
Number of extensions: 69442
Number of successful extensions: 226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -