Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D13
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.070
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 0.070
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 831 ILVLQANRLTKIENLEQXNKLDQLYISENGITAIENLEN--QTKLQTLDLAVNRITVIEN 658
           +L L  N +   +       L  L I  N I ++ N      +K++TLD + NRIT +  
Sbjct: 553 LLNLSENHIEWFDYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSP 612

Query: 657 VRHMSDLEELWLNDNQI 607
           +     +E L++N+N I
Sbjct: 613 LSVPDSVELLFINNNYI 629



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 645 SDLEELWLNDNQITEWSSIEYLQQNNKLSTIYLERNPI 532
           +D+  L L+ N+IT       L    +L  ++L+RN I
Sbjct: 212 ADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAI 249


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 320 EVNEFKEEQFYINRL 364
           EVN+ KEE F ++RL
Sbjct: 87  EVNDKKEENFIVDRL 101


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 33  YDTEAVHKIAHLSNSNSTIPTK 98
           Y+     +I H+S+S STI +K
Sbjct: 202 YNNNTEWEIVHMSHSESTIDSK 223


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 162 LRGIKITSSLVSCSVYIF 109
           L  IK+T SL++   ++F
Sbjct: 284 LENIKLTDSLIAAQAFVF 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,333
Number of Sequences: 438
Number of extensions: 5304
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)