Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D11
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   156   3e-39
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    48   1e-06
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   2.7  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   6.1  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   8.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   8.1  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  156 bits (379), Expect = 3e-39
 Identities = 82/147 (55%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
 Frame = -3

Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
           VSR GTLTYEA +QTT T LGQ+L +GIGGDPF GT+FID L++FL DP T+GIILIGEI
Sbjct: 184 VSRSGTLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEI 243

Query: 685 GGNAEELASEYLTQYNTGQKA-KPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKA 509
           GG+AEE A+E++   N  +   KPVVSFIAG TAP GRRM             A  K +A
Sbjct: 244 GGSAEEDAAEFIRAANASRSTPKPVVSFIAGATAPKGRRMGHAGAIVAGGKGTAAAKFEA 303

Query: 508 LEKANVIVTRSPAKMGVELHKEMKRLE 428
           LE A V ++RSPA +G  + +E+ +L+
Sbjct: 304 LEAAGVRISRSPATLGSLIVEELNKLK 330


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 32/90 (35%), Positives = 47/90 (52%)
 Frame = -3

Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
           VS+ G ++ E  +  + T  G    + IGGD + GT FID L  F  DP  K ++L+GE+
Sbjct: 180 VSKSGGMSNELNNIISHTTDGVYEGIAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEV 239

Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAG 596
           GG  E    E +     G   KP+V++  G
Sbjct: 240 GGVEEYRVIEAV---KNGTIKKPIVAWAIG 266


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 657 SDANSSAFPPISPMRMMPLVSGSLRKT 737
           ++ NS   P    ++M+PLV   LRKT
Sbjct: 204 AELNSEQLPATEKLKMLPLVDAVLRKT 230


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 769 FNGTDFIDCLEVFLKDPETKGIILIG-EIGGNAEELASEYLTQYNTGQKAKPVVS 608
           +N  DF+    + +  P T+   +   E   NA + A +YL Q N+   ++P+++
Sbjct: 319 WNEVDFLQLKGLEISPPPTRPKFIPELEFPDNARKRALKYLNQSNSVSSSEPIIT 373


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 766 NGTD-FIDCLEVFLKD-PETKGIILIGEIGGNAEELASEYLTQYNTG 632
           NG D F+D L  +  +    K IIL   IGG+ EE       QYN G
Sbjct: 317 NGKDKFVDSLNSWTSELTHCKNIILTPHIGGSTEE------AQYNIG 357


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 349 YCYYLFSIVVTICLVLLF 296
           + +YLF+IV+T C+  +F
Sbjct: 543 FIFYLFTIVITFCMSAVF 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,397
Number of Sequences: 5004
Number of extensions: 66210
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)