Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D11
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   169   3e-42
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    46   4e-05
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834...    29   3.7  
02_05_0953 - 33027007-33029079                                         29   3.7  
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887...    29   3.7  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  169 bits (410), Expect = 3e-42
 Identities = 85/144 (59%), Positives = 102/144 (70%)
 Frame = -3

Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
           VSR GTLTYEA  QTT  GLGQ+ CVGIGGDPFNGT+F+DCLE F+ DP+T+GI+LIGEI
Sbjct: 186 VSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEI 245

Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKAL 506
           GG AEE A+ ++ +  T    KPVV+FIAGLTAPPGRRM             A DKIKAL
Sbjct: 246 GGTAEEDAAAFIQESKT---QKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKAL 302

Query: 505 EKANVIVTRSPAKMGVELHKEMKR 434
            +A V V  SPAK+G  + +  K+
Sbjct: 303 REAGVTVVESPAKIGSTMFEIFKQ 326


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 30/93 (32%), Positives = 48/93 (51%)
 Frame = -3

Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
           VS+ G ++ E  +       G    + IGGD F G+   D +  F   P+ K ++++GE+
Sbjct: 190 VSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGEL 249

Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAGLTA 587
           GG  E    E L Q   G+  KPVV++++G  A
Sbjct: 250 GGKDEYSLVEALKQ---GKVQKPVVAWVSGTCA 279


>05_04_0098 +
           17982196-17982355,17982761-17982978,17983232-17983418,
           17983957-17984057,17984708-17984885,17984956-17985233
          Length = 373

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 766 NGTDFIDCLEVF--LKDPETK-GIILIGEIGGNAEELASEYLTQYNTGQK 626
           + T+F+D  +++  LK P  K G  +I   G +A E+ SEY+    TG+K
Sbjct: 156 DATEFLDRYQMYKLLKGPYDKEGACIIVTAGSDAIEIESEYMFGTLTGEK 205


>02_05_0953 - 33027007-33029079
          Length = 690

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 479 TGDDYISFF*SLNFVHGASFAARNDGTGVTHSSARGSRQTGD 604
           T DDYI+F  SL +         NDG+  T  S R  R  GD
Sbjct: 549 TADDYITFLCSLGYNSSQIALFTNDGS-TTDCSTRPRRSVGD 589


>02_02_0315 +
           8872199-8872815,8873141-8873243,8873346-8873405,
           8873558-8873632,8873718-8873792,8873876-8873956,
           8874466-8874657,8874762-8874947,8875047-8875094
          Length = 478

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -3

Query: 772 PFNGTD---FIDCLEVFLKDPETKGIILIGEIGGNAEELASEYLT 647
           P++G D   F+  L +  KDPE   ++++ +  GN+ EL +E +T
Sbjct: 176 PYDGEDKNGFLKKLSLRFKDPENTTLVILDKFDGNS-ELVAELVT 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,965,554
Number of Sequences: 37544
Number of extensions: 406239
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)