Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_D11
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 197 7e-51
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 194 7e-50
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL110485-22|CAB60371.1| 399|Caenorhabditis elegans Hypothetical... 30 2.5
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 28 7.6
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 7.6
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 7.6
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 7.6
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 7.6
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 7.6
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 7.6
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 197 bits (481), Expect = 7e-51
Identities = 96/142 (67%), Positives = 109/142 (76%)
Frame = -3
Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
VSR GTLTYEA HQTT GLGQT C+GIGGDPFNGT+FIDCLEVFL+D +TKGIILIGEI
Sbjct: 178 VSRSGTLTYEAVHQTTTVGLGQTRCIGIGGDPFNGTNFIDCLEVFLEDEQTKGIILIGEI 237
Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKAL 506
GG AEE A+E+L N+G AKPVVSFIAG+TAPPGRRM A DKI+AL
Sbjct: 238 GGQAEEQAAEFLKSRNSGSNAKPVVSFIAGVTAPPGRRMGHAGAIIAGGKGTAGDKIEAL 297
Query: 505 EKANVIVTRSPAKMGVELHKEM 440
ANV+VT SPAK+GV + K +
Sbjct: 298 RNANVVVTDSPAKLGVAMQKAL 319
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 194 bits (473), Expect = 7e-50
Identities = 94/138 (68%), Positives = 106/138 (76%)
Frame = -3
Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
VSR GTLTYEA HQTT G GQTLCVGIGGDPFNGT+FIDCL VFL+DPETKGIILIGEI
Sbjct: 177 VSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEI 236
Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXXXXXXXXXXAMDKIKAL 506
GG+AEE A+ YL ++N+G KPVVSFIAG+TAPPGRRM A DKI AL
Sbjct: 237 GGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINAL 296
Query: 505 EKANVIVTRSPAKMGVEL 452
+A V+VT SPAK+G +
Sbjct: 297 REAGVVVTDSPAKLGTSM 314
>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
protein D1005.1 protein.
Length = 1106
Score = 41.1 bits (92), Expect = 0.001
Identities = 28/93 (30%), Positives = 45/93 (48%)
Frame = -3
Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
VSR G ++ E + + G + IGGD + G+ + D + + D K I+L+GE+
Sbjct: 660 VSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEV 719
Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAGLTA 587
GG E + L Q KP+V++ G A
Sbjct: 720 GGVEEYKIVDLLKQKKV---TKPLVAWCIGTCA 749
>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
protein B0365.1 protein.
Length = 1099
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = -3
Query: 865 VSRXGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 686
VSR G ++ E + + G + IGGD + G+ + D + + D K I+L+GE+
Sbjct: 656 VSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVMRYQHDDRVKMIVLLGEV 715
Query: 685 GGNAEELASEYLTQYNTGQKAKPVVSFIAGLTA 587
GG E E L + KP++++ G A
Sbjct: 716 GGIEEYRIVELLKEKKI---TKPLIAWCIGTCA 745
>AL110485-22|CAB60371.1| 399|Caenorhabditis elegans Hypothetical
protein Y46G5A.28 protein.
Length = 399
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 103 NYLIAFLTNXSAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDI 234
+YL FL N Y++ CT++F+ + I+ K +++ L ++
Sbjct: 331 SYLKGFLENGDDYMVSCTLKFLLGMPITLSQFKTSHVEACLENL 374
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 235 CMYEIKYYIFMKI-SICLRNRKITIQDKL*QQSKINNSNIVTKTLYKSGST*RVY 396
C+ +KY M I S C+ +R +Q L + N + I +KT+ K RVY
Sbjct: 4 CISLLKYLFCMSILSNCMADRANDVQKALNETCVFNETEINSKTIKKFPKCDRVY 58
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 402 KCVNALGRTTLV*CFSYYIAIIYFRLLLQFVLYCYF 295
KCV+ LGR V F+ Y ++ + + L F++Y Y+
Sbjct: 249 KCVDDLGRELFV-VFTLYSFVLAYLMPLLFMIYFYY 283
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 360 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 259
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 122 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 152
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 360 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 259
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 122 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 152
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 360 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 259
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 360 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 259
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 360 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 259
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 360 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 259
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 152 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,803
Number of Sequences: 27780
Number of extensions: 377289
Number of successful extensions: 839
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -