Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D11
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          27   0.17 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      27   0.17 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 483 PVLRPKWAWNFT 448
           P+ RP WAWNFT
Sbjct: 653 PLDRPMWAWNFT 664


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 483 PVLRPKWAWNFT 448
           P+ RP WAWNFT
Sbjct: 653 PLDRPMWAWNFT 664


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 238 YIYQPD*VLYNNA 200
           +I++PD VLYNNA
Sbjct: 109 HIWRPDIVLYNNA 121


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 238 YIYQPD*VLYNNA 200
           +I++PD VLYNNA
Sbjct: 109 HIWRPDIVLYNNA 121


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 238 YIYQPD*VLYNNA 200
           +I++PD VLYNNA
Sbjct: 105 HIWRPDIVLYNNA 117


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 174 YSNFNKTNKALLYK 215
           Y+N+N  NK L YK
Sbjct: 94  YNNYNNYNKKLYYK 107


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 238 YIYQPD*VLYNNA 200
           +I+ PD VLYNNA
Sbjct: 101 HIWLPDIVLYNNA 113


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 238 YIYQPD*VLYNNA 200
           +I+ PD VLYNNA
Sbjct: 101 HIWLPDIVLYNNA 113


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 235 IYQPD*VLYNNA 200
           +++PD +LYNNA
Sbjct: 87  VWRPDTILYNNA 98


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 235 IYQPD*VLYNNA 200
           I+ PD VLYNNA
Sbjct: 115 IWLPDIVLYNNA 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,624
Number of Sequences: 438
Number of extensions: 4761
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)