Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D08
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   2.2  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    26   5.0  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   8.8  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   8.8  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 159 GLRVVDASVMPTITSGNTYAPVV 91
           G+R++D S  P   SGN Y+PVV
Sbjct: 316 GIRLID-STKPEANSGNVYSPVV 337


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 159 GLRVVDASVMPTITSGNTYAPVV 91
           G+R++D S  P+  SGN Y+PVV
Sbjct: 236 GIRLID-SANPSSNSGNVYSPVV 257


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 159 GLRVVDASVMPTITSGNTYAPVV 91
           G+R++D S  P+  SGN Y+PVV
Sbjct: 236 GIRLID-SANPSSNSGNVYSPVV 257


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 473 FREIFPLDSGCSSVISENTVSCPKPASDR 559
           F EI   +S   SV +E T+S P+P+S R
Sbjct: 291 FDEILHANSSVHSVATEATISNPRPSSGR 319


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -2

Query: 591 MLMLSDDICIALSEAGLGQETVFSLITLLHPE-SRGKISLKSSNPEDPPIIYSGYFTNEN 415
           +L   D++ + + +  L Q+T  S  +    E S+  IS  SS         +G  + + 
Sbjct: 212 VLSFGDEVDMPIVKKPLRQKTPVSRSSDTTTELSKDLISSSSSIHSTYSSAQTGLTSAKV 271

Query: 414 DLDNFARYLENFNTVINSTHFKELKSQVVDLK 319
             D +AR ++  +T +NS+   +++ ++  LK
Sbjct: 272 SSDEYARQVDTLDTKLNSSSKSKVQEEISRLK 303


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -2

Query: 627 TASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPED-P 451
           T  FLP    +  L++ DD  + LS   + +   FS     H +   +I+ + S  E  P
Sbjct: 46  TTRFLPFCDLNPALLVKDDKLVTLSYPQISKYFTFS--PFEHTDK--QIAERFSKGESLP 101

Query: 450 PIIYSGYFTNENDLDNFARY 391
            ++Y G        DN++++
Sbjct: 102 VLVYMGNEERNGPTDNWSQH 121


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
 Frame = -2

Query: 570 ICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPE--DPPIIYSGYFTNE--NDLDN 403
           I IAL+   +    + S+I LL     G+I LK++NP   D   + + +   E  + LD+
Sbjct: 26  IFIALAAVIVLLICLLSVILLLRYTRHGRILLKNTNPGELDDEALENEHIDEEGFSLLDD 85

Query: 402 FA--RYLENFNTVINSTHFK-ELKSQVVDLKVTQCR---QWPFGSHEYWACYALNLASTQ 241
               RYL+     +NS        ++++D    Q +    W F  ++ + CY  N     
Sbjct: 86  MGKERYLQAREFELNSMKSNVNTDAKLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELS 145

Query: 240 YHTVGTCAM 214
           +     C M
Sbjct: 146 FLGNEECCM 154


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 450 PIIYSGYFTNENDLDNFARYLENFNTVIN 364
           P++ S    N    D+F   +E FN++IN
Sbjct: 820 PVLLSNMTINSETFDDFEFSVEQFNSLIN 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,147
Number of Sequences: 5004
Number of extensions: 61572
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)