Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_D08
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.5
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 29 4.7
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 4.7
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 4.7
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 8.2
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 79.4 bits (187), Expect = 3e-15
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Frame = -2
Query: 507 LHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTVINSTHFKELKSQVV 328
+ +S+G I L++ +P PII Y ++D F + + + S F E + + +
Sbjct: 436 MRSQSKGYIMLQAKDPRRAPIINPNYMEEDSDWREFRKCIRVSRELFASKAFDEFRGKEL 495
Query: 327 DLKVTQCRQWPFGSHEYWACYALNLASTQYHTVGTCAMG---DKHIGVVDSRLRVHGVTG 157
C+ S + A++ YH TC MG DK V + V+G
Sbjct: 496 -APGPDCQ-----SDADIDRFVKEKAASAYHPSCTCKMGSENDKMAVVNPETMGVYGTEN 549
Query: 156 LRVVDASVMPTITSGNTYAPVVMIAEKAADMIK 58
L+VVDASVMP+I SGN APV+M+AE+AAD+IK
Sbjct: 550 LKVVDASVMPSIVSGNLNAPVIMMAERAADLIK 582
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +2
Query: 413 SFSLVK*PE*IIGGSSGLELFREIFPLDSGCSSVISENTVSCPKPASDRAMHISSLNMSI 592
+F ++ P +G S + I P C +V+ T + P P A SS +MS+
Sbjct: 301 TFLIIMSPAHFLGISLSVTYCVIISPYRRVCIAVLMLITCTSPSPHPRSANSTSSSSMSV 360
Query: 593 CEHISTGRNEAV 628
EHI N V
Sbjct: 361 IEHIMRRHNYRV 372
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 597 SQM--LMLSDDICIALSEAGLGQETVFSLITLLHPESR 490
SQM L+LS CI +S+ G G+ F L LLH +++
Sbjct: 112 SQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 58 LDHIRRLLSYHYYWGIRVSAGNGWHNASVHHSKTCHTVN 174
LD + RL+ YH++WG + G+ + + H V+
Sbjct: 81 LDQVYRLVQYHFHWGENDNEGSEHTLGGLRYPAELHLVH 119
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 576 DDICIALSEAGLGQET-VFSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNF 400
D I +L+ E + S + H E+ GK+++K +P + ++ S + +DL F
Sbjct: 2000 DSIYSSLNTLAASMENEIISQELVRHTENAGKVNIKPISPRE--LVSSSFKITSSDLQQF 2057
Query: 399 ARYLENFN 376
LE +
Sbjct: 2058 FNVLEKMD 2065
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 576 DDICIALSEAGLGQET-VFSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNF 400
D I +L+ E + S + H E+ GK+++K +P + ++ S + +DL F
Sbjct: 2000 DSIYSSLNTLAASMENEIISQELVRHTENAGKVNIKPISPRE--LVSSSFKITSSDLQQF 2057
Query: 399 ARYLENFN 376
LE +
Sbjct: 2058 FNVLEKMD 2065
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 467 ELFREIFPLDSGCSSVISENTVSCPKPASDRAMHISSLNMSICEHISTGRN 619
++F + F L S S + S+NT+S + ++ S+ + +I E+ ST N
Sbjct: 60 DVFLDRFSLQSVDSGISSQNTISSTRSSTPEDFKTSNRHSNIYENSSTTMN 110
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 134 TLASTTRRPVTP*TLNLESTTPICLSPMA 220
T +TT RP TP +TTP+ +P+A
Sbjct: 300 TPLATTSRPTTPSPTTPRATTPLATTPLA 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,770
Number of Sequences: 27780
Number of extensions: 348789
Number of successful extensions: 1102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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