Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D03
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    91   1e-19
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    28   1.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.0  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.0  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.3  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   5.3  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   7.0  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   9.3  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = -1

Query: 643 QERIDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 503
           +   DKK++PTWHCIVGRNFGS+VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 39  KREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTVAFLLFKSG 85



 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = -2

Query: 753 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKELTR 625
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+E  +
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDK 44


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 404 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIR 580
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H     ++ +  ++  + 
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITHTHDESLEWIVVILMGLL 366

Query: 581 AKITTHDAMPGRIVFLVNSFLMN 649
             I    A+   +V L + F +N
Sbjct: 367 VLI----ALFSIVVRLADGFKLN 385


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 63  GPNKIYCFNLFVITFXWRYFS 1
           GP  IYC+N F+IT    +FS
Sbjct: 199 GPKDIYCWNRFLITELDNHFS 219


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 664 KGHSCIHQERIDKKYNPTWHCIVGRNFGSY 575
           KG  C   +R       TW C  G+N+G +
Sbjct: 205 KGRECYMLKRAQILVAETWACFQGQNYGRF 234


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = -1

Query: 319 ESGCTVFTYTVYLIRNSQCWTLTASYLFT*SQAHAVYVCTVLAIT*GTFDL*TFTSPSVF 140
           ESG  +     +LI N  C     S+L    QA   Y+C  L    G F L      +V 
Sbjct: 122 ESGFCLPDQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCDYLRS--GEFPL------TVL 173

Query: 139 ILKEILVNYYPR 104
           I   +L  YYP+
Sbjct: 174 IHHVMLYQYYPK 185


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 598 RCNAR*DCISCQFFLDECSYV 660
           RCN    C +C  + +EC YV
Sbjct: 17  RCNGELTCQNCMVYGEECRYV 37


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 443 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 565
           P+DN A+     IE +L+G+T  KE+  H+ ++     ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 771 KMXDRKAVIKNADMSEEMQQDAVDCATQALEKF 673
           KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 529 KMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,322
Number of Sequences: 5004
Number of extensions: 55625
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)