Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_D03
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       61   8e-10
02_04_0361 - 22359278-22359439,22362291-22362728                       60   2e-09
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           54   2e-07
01_06_0783 + 31975261-31975398,31975583-31975726                       51   1e-06
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     42   6e-04
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    28   7.3  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    28   7.3  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = -1

Query: 643 QERIDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 506
           ++  DK Y PTWHCIVG ++GS+VTH    F+YF + ++ ++LFK+
Sbjct: 159 KKEFDKVYGPTWHCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = -1

Query: 643 QERIDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 506
           ++  D  Y P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 145 KKEFDATYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/45 (55%), Positives = 32/45 (71%)
 Frame = -2

Query: 756 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKELTRN 622
           K  +K+ADM EEM+Q+A D A  A EK  +EKDIA +IKKE  +N
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKN 90



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 643 QERIDKKYNPTWHCIVGRNF 584
           ++  DK + PTWHCIVGRNF
Sbjct: 84  KKEFDKNHGPTWHCIVGRNF 103


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -1

Query: 643 QERIDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 509
           ++  D  + P W C+VG +FG Y TH    FIYF LG +  L+FK
Sbjct: 45  KKEFDMIHGPGWQCVVGASFGCYFTHSKGSFIYFKLGALRFLVFK 89


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = -2

Query: 756 KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKK 637
           K  IK+A+M EEM+Q+A D    A EK  +EKDI  +IK+
Sbjct: 58  KIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIKE 97



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 640 ERIDKKYNPTWHCIVGRNFGS 578
           +  DK + PTWHCIVG NFG+
Sbjct: 96  KEFDKNHGPTWHCIVGHNFGT 116


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -1

Query: 658 HSCIHQERIDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG*TI*HHFY 479
           H  I + R+D     TW       F S+V HE        L  +A ++F+      H   
Sbjct: 238 HDNIQKRRVDLNSEITWEEYKSMKFTSHVIHEA-----LRLANIAPVMFRKATEDVHIKG 292

Query: 478 FFVSSGRSII 449
           FF+  G  I+
Sbjct: 293 FFIPKGSKIM 302


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 741 NADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKELTRNTILPGIASWVVILA 580
           +AD+++ M Q   DC T+          IA  +K+++     L G +  +V+LA
Sbjct: 411 SADLNDAMDQPPSDCLTRVRLLEQYASTIAELVKEKIKDAKHLEGFSIQLVVLA 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,850
Number of Sequences: 37544
Number of extensions: 342762
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)