Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C22
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1682 - 39130696-39131705,39132355-39132583                       33   0.33 
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.0  
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450...    31   1.3  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    29   4.1  

>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 637 YYDPNRPQTAYVPPPYN--DQPPTYQES 560
           YY  + P   Y PPPYN    PPTYQ S
Sbjct: 320 YYFNSPPANHYSPPPYNFGSSPPTYQYS 347



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -2

Query: 637 YYDPNRPQTAYVPPPY--NDQPPTYQES 560
           Y  P  P   Y+PPPY  N  PP YQ S
Sbjct: 265 YNSPIPPTNKYLPPPYYFNSPPPQYQHS 292


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 634 YDPN-RPQTAYVPPPYNDQPPTYQESTS 554
           Y PN RP + Y+PPP    PP Y ++ S
Sbjct: 400 YPPNVRPPSPYMPPPSGPAPPFYGQNQS 427


>05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,
            4508324-4508582,4508656-4508868,4508946-4509071,
            4509159-4509296,4509376-4509721,4509822-4510088,
            4510427-4510616,4510700-4510784,4510885-4511072,
            4511262-4511457,4512027-4512113
          Length = 1076

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +3

Query: 105  NYKLY*IHFVAIVNTLIYYVTHYPLIAFDNTRCQFLSKTCKLILN*YFK*ECIDYINYYF 284
            N +L  +  +A +NT++Y +T  PLIA+    C  L   C L+ N +   E  +Y   +F
Sbjct: 837  NGRLKLLERLAYINTIVYPITSIPLIAY----C-VLPAIC-LLTNKFIIPEISNYAGMFF 890

Query: 285  LHFFTTI 305
            +  F +I
Sbjct: 891  ILLFASI 897


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 390 CKPIV-VVRFNLPLVTPKGDVKAFMNFYILLSNT 488
           C+P+   VRFN+  V P G     + FY+L S T
Sbjct: 120 CRPLSKTVRFNVIKVIPAGSTAPSLPFYLLTSGT 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,893
Number of Sequences: 37544
Number of extensions: 279530
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)