Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C22
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 539 MHCPHYHMKPWLSDNPKSIRQ*NVKVHK 456
           MH  H HM+P    +    +Q +++ H+
Sbjct: 172 MHTQHPHMQPQQGQHQSQAQQQHLQAHE 199


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 701 SCETPWISGWR 733
           S +TPW  GW+
Sbjct: 205 SPKTPWYKGWK 215


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 768 EGLLLATREHQRRHPDIQG 712
           + LLL+TR  +R  P +QG
Sbjct: 66  DNLLLSTRYDKRLLPPVQG 84


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 768 EGLLLATREHQRRHPDIQG 712
           + LLL+TR  +R  P +QG
Sbjct: 66  DNLLLSTRYDKRLLPPVQG 84


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 768 EGLLLATREHQRRHPDIQG 712
           + LLL+TR  +R  P +QG
Sbjct: 66  DNLLLSTRYDKRLLPPVQG 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,220
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)