Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C21
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    26   6.6  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    26   6.6  

>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 329 KELPQPKMYKFTILFLVLACFIMAEAQLTFTSSW 228
           + L    +Y FTI+  V+ CF + +AQ  F++S+
Sbjct: 202 RNLMTASVYCFTIIVFVVTCFFIRKAQ-NFSNSF 234


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 214 LPSPALCPAGTMKPWRLFINLFRMKLKNSC 125
           L + A+C  GTM  + ++I  F ++  NSC
Sbjct: 71  LTAVAVCDIGTMASYLIYIIHFVLRRNNSC 100


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 329 KELPQPKMYKFTILFLVLACFIMAEAQLTFTSSW 228
           + L    +Y FTI+  V+ CF + +AQ  F++S+
Sbjct: 202 RNLMTASVYCFTIIVFVVTCFFIRKAQ-NFSNSF 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,569,065
Number of Sequences: 27780
Number of extensions: 176300
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)