Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C18
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    84   7e-18
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   4.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   4.8  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   6.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.3  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 46/100 (46%), Positives = 59/100 (59%)
 Frame = -3

Query: 350 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 171
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 170 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 51
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   K
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRK 102


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 173 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQER 27
           +K   NL    KN+K K + L        +KAL K E + + E++ +ER
Sbjct: 5   EKQVENLSLEAKNEKPKEVILGEDGKPLSKKALKKLEKEREKEQKRKER 53


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 146 HYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQERNLSSHLES 3
           H +    +  + +A+  +A R  L  H    K E+R  ERN    L++
Sbjct: 278 HGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQA 325


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 149 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAK 57
           +H KN++Y  L+ + +K     KAL   TKH  K
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTK 68


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 182 VYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 57
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,037
Number of Sequences: 5004
Number of extensions: 21241
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)