Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C14
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    31   0.15 
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   4.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.6  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   7.5  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 69  KNILFKNKSLTKNTFTTNHSLISFFFLISNLKXVRNIINWNNFYSTKINTV 221
           +N +  + S+  + +   H LIS ++L+S  +      NWN    T +++V
Sbjct: 483 ENPILPSLSMNTDIYDAFHPLISIYYLVSERRVYEKGGNWNRIAKTPVSSV 533


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 435 HIFWFXVIIMQSDKFTFHGMFKN*XAIDSFIXR 533
           +I  F  I  ++DK  FHG+  +  A+DSF+ R
Sbjct: 17  YIAKFFEIFSKNDKIRFHGVSLDRKALDSFMVR 49


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 733  PTLMAKVVN*FKKYINNCCYNTICKNDSDIIVLEFYKTGIPLRYF 599
            PT + K+   ++  I N    TICK D  I+   FY    P R F
Sbjct: 1743 PTALTKIFGFYRVDIRNPTTGTICKTDIMIMENVFYDE-CPSRIF 1786


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +3

Query: 63  KSKNILFKNKSLT----KNTFTTNHSLISFFFL 149
           KSK+IL  + +LT    K T+T  ++ IS FFL
Sbjct: 303 KSKHILMSSINLTLGSLKKTYTVANTAISLFFL 335


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 670 TICKNDSDIIVLEFYKTGIPLRYFPGPVRQNTE 572
           T+CKN+++   L     G   ++F GP+ +  E
Sbjct: 441 TLCKNENNKTTLHGGNNGFDKQFFLGPIARQYE 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,328
Number of Sequences: 5004
Number of extensions: 53342
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)