Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C14
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   4.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.5  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 342 YLERGVFKMLKYSIIICSFDXVYLQNKTILVHIFWFXV 455
           Y  RG   +L  S ++C    VY     ++++ +WF +
Sbjct: 206 YFNRG---LLSASYLVCYGIWVYFVPLFLIIYSYWFII 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 342 YLERGVFKMLKYSIIICSFDXVYLQNKTILVHIFWFXV 455
           Y  RG   +L  S ++C    VY     ++++ +WF +
Sbjct: 82  YFNRG---LLSASYLVCYGIWVYFVPLFLIIYSYWFII 116


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 63  KSKNILFKNKSLTKNTFTTNHSLISFFFLISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +S+N   + +S      + N+SL +      N     N  N+NN Y+T    +Q+ N
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSN------NYNYNNNYNNYNNNYNTNYKKLQYYN 116


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 153 SNLKXVRNIINWNNFYST 206
           S  + +RNI++W  F+ T
Sbjct: 217 SGWRKLRNIVHWTPFFQT 234


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 153 SNLKXVRNIINWNNFYST 206
           S  + +RNI++W  F+ T
Sbjct: 132 SGWRKLRNIVHWTPFFQT 149


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 153 SNLKXVRNIINWNNFYST 206
           S  + +RNI++W  F+ T
Sbjct: 451 SGWRKLRNIVHWTPFFQT 468


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 ISNLKXVRNIINWNNFYSTKINTVQF*N 233
           +SN     N  N+NN Y+T    +Q+ N
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 21  ICI*KENHII*ETRKSKNILFKNKSLTKNTFTTNHSLIS 137
           +C+ K +  I  T +  N  FK   L   T TT HS+ S
Sbjct: 76  MCVEKVSTTIVPTTQEINKPFKRLELFNITTTTIHSIHS 114


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 301 NXNESHTFNNDTSYLYYAFI 242
           N N ++ +NN+   LYY  I
Sbjct: 340 NNNYNNNYNNNCKKLYYNII 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,932
Number of Sequences: 438
Number of extensions: 4294
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)