Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C09
         (842 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   4.0  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   4.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   7.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   7.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.2  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 247 MYVMFCLIINITT 285
           MY M+CL+I +TT
Sbjct: 280 MYSMYCLLILLTT 292


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 247 MYVMFCLIINITT 285
           MY M+CL+I +TT
Sbjct: 280 MYSMYCLLILLTT 292


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 481 TGGYIYGVHIWWRSLTGYKVPPCICRALLS 392
           T G IYG+ +  R   G    P +C+ + S
Sbjct: 241 TQGQIYGIKVDIRDAYGNVKIPVLCKLIQS 270


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/57 (22%), Positives = 20/57 (35%)
 Frame = -2

Query: 484 LTGGYIYGVHIWWRSLTGYKVPPCICRALLSPEITHGIPYYKRFA*LTDGSPCYQLL 314
           L  GY +  H+          P     ALLSP + H +  +        G P  + +
Sbjct: 101 LANGYNHSPHLSHMQFMQLPHPAAAHSALLSPAMPHNLTRHDGSVIKNQGMPTMEAI 157


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 284 PPSPNSPIEC*KLVTRRAVCKSRESLV 364
           PP P  PI    ++   A+C+S   L+
Sbjct: 181 PPLPLPPIFAPTMINPSAICESAAQLL 207


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 284 PPSPNSPIEC*KLVTRRAVCKSRESLV 364
           PP P  PI    ++   A+C+S   L+
Sbjct: 181 PPLPLPPIFPPTMINPSAICESAAQLI 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,442
Number of Sequences: 336
Number of extensions: 4226
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)