Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C09
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    30   0.47 
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    28   1.4  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.8  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   7.7  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 107 SPINMNTKLCLVTKHQNQHLYSISNTLIHI 196
           +P+N+  KL  +TK++NQ LY++    I I
Sbjct: 16  TPLNIQKKLLPITKYRNQLLYAVEQNQITI 45


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -2

Query: 454 IWWRSLTGYKVPPCICRALLSPEITHGIPYYKRFA*LTDGSPCYQLLTFNR 302
           I W SLTG +V P     LL    TH  P       L D     QL+T N+
Sbjct: 416 ILWESLTGERVTPIHAMDLLDNRFTHASPNRSSCVVLMD--ELDQLVTHNQ 464


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 253 HTFYNRRTVTLKIVRNFIVYVDKGIRNR 170
           H FYN R +T+   +  + YV  GI+ R
Sbjct: 581 HAFYNARAMTVSTPQLPVEYVINGIKRR 608


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 244 KMYVMFCLIINITTPLPKFTY*MLE 318
           K+Y++  LIIN   P  KF Y +L+
Sbjct: 19  KLYLLISLIINKKLPEAKFVYKLLD 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,323
Number of Sequences: 5004
Number of extensions: 66340
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)