Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C09
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 708 VTLAYGNRQIIYFLITLNYYMT*PSPFFTSLKFSD 604
           V   +GN  +I  ++   Y  T  + F TSL F+D
Sbjct: 57  VATVFGNTLVILAVVRERYLHTATNYFVTSLAFAD 91


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 407  PRFTKSRNYARNPLLQAIRVTYR 339
            P+  K RNY R+ L++A+R   R
Sbjct: 1035 PKRGKYRNYDRDSLVEAVRAVQR 1057


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 676 IFFDNLELLYDVTLPFLYVTQIFG 605
           IF++ +E   +   PF Y  +IFG
Sbjct: 576 IFYEKIETSLNSDKPFTYNERIFG 599


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 676 IFFDNLELLYDVTLPFLYVTQIFG 605
           IF++ +E   +   PF Y  +IFG
Sbjct: 576 IFYEKIETSLNSDKPFTYNERIFG 599


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 152 QNQHLYSISNTLIHINNKISYYFKR 226
           +++ + S+SN  IH NN    Y K+
Sbjct: 311 ESKIISSLSNKTIHNNNNYKNYNKK 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,460
Number of Sequences: 438
Number of extensions: 5323
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)