Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C08
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    29   0.051
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 546 LITYNLHHVKCNTFAIKEEMGFKDEEIKM 460
           L+  N+HH+  NTF +K EM   D  + +
Sbjct: 210 LLGNNMHHILGNTFGLKPEMKTSDRGVPL 238


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 104 NKLLLGKTG*FIITVHKVFKNILKSSISHFAK 199
           +KLL    G  ++ V ++FKN+L++    F +
Sbjct: 378 DKLLNPDLGLSLLQVAQIFKNLLENHYEEFVR 409


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 281 RPNDCKKRCLC 313
           RP DC++ C+C
Sbjct: 558 RPADCQQNCMC 568


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 585 HLNQNIVDKIRIFYQL*LYLLLD 653
           H  +   + I  FYQL LYL+ D
Sbjct: 150 HTVEYFQNYIHFFYQLLLYLITD 172


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 281 RPNDCKKRCLC 313
           RP DC + C+C
Sbjct: 558 RPPDCGQNCMC 568


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,420
Number of Sequences: 336
Number of extensions: 3404
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)