Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C08
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   2.8  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.4  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -1

Query: 432 MINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYD 268
           +I+Q +L+ +  Y  ++++ P T   +N G+ +S  F   Q+ LF+  +   +YD
Sbjct: 218 LIHQHILVNQRVYAEDVIE-PKTFHYKN-GISISMKFDKDQKKLFINDVSTTKYD 270


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 104 FQMH*LSDIIEHQKCLQQVNT 42
           FQ+  ++DI+ HQKC++++ T
Sbjct: 29  FQVPQIADILVHQKCIERLGT 49


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = -1

Query: 417 MLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYDPKKVNYVPIK 238
           ++ + F+Y  N+ K+P T + +       + F + QR   L  +G  + D     YV   
Sbjct: 147 LISDSFSYRLNLSKLPRTPLEKCTVARACKQFPLNQRSPLLDLMGSFERD-----YVNFS 201

Query: 237 ALVEKTDVEFCNNFA 193
              +    + C++ A
Sbjct: 202 NFSQMLSAQLCDSMA 216


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 282 RAQYDPKKVNYVPIKALVEKTDVEF 208
           R Q + KK+N  P  A+V  +DVEF
Sbjct: 8   RFQRNKKKINSKPGGAMVASSDVEF 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,492
Number of Sequences: 5004
Number of extensions: 53498
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)