Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_C08
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 33 0.18
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828... 33 0.23
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 33 0.23
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 31 0.71
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 30 1.6
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 29 3.8
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 29 3.8
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 29 3.8
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 7 HFATNICALIGGVFT 51
HF TN+CA+IGGVFT
Sbjct: 457 HFITNVCAIIGGVFT 471
>04_04_0097 -
22782031-22782122,22782504-22782570,22782769-22782861,
22782981-22783034,22783163-22783214,22783346-22783413,
22783532-22783711,22783843-22783935,22784585-22784665,
22785011-22785091,22785204-22785331,22786502-22786643
Length = 376
Score = 33.1 bits (72), Expect = 0.23
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 7 HFATNICALIGGVFT 51
HF TN+CA++GGVFT
Sbjct: 336 HFLTNVCAIVGGVFT 350
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 33.1 bits (72), Expect = 0.23
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 7 HFATNICALIGGVFT 51
HF TNICA++GG+FT
Sbjct: 365 HFLTNICAIVGGIFT 379
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 53 VAGIFDALLYHSINAFENKLLLGKTG 130
VAGI D+ +YH A + K+ +GK G
Sbjct: 380 VAGIIDSFVYHGHRAIKKKMEIGKLG 405
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 31.5 bits (68), Expect = 0.71
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 7 HFATNICALIGGVFT 51
H+ TN+CA++GGVFT
Sbjct: 286 HYLTNLCAIVGGVFT 300
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 53 VAGIFDALLYHSINAFENKLLLGK 124
V+GI D+ +YH A + K+ LGK
Sbjct: 301 VSGIIDSFIYHGQKALKKKMELGK 324
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 186 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 314
H L N +K ++H +L LL H+ ++ I H++ T KR V
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIV 110
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 186 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 314
H L N +K ++H +L LL H+ + I H++ T KR V
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 186 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 314
H L N +K ++H +L LL H+ + I H++ T KR V
Sbjct: 133 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 177
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -1
Query: 501 IKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVF 322
+ EE+GF +++ +++ P ++++ + ++ + + I++ VLLS
Sbjct: 260 LMEELGFSQDDLLVIMRKLPNFLALSEKKIRRAVEFLKRDVGLEGRYIVQRP-VLLSYSL 318
Query: 321 --RIKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNF 196
R+ RH L+ L +++Y AL EK +F N F
Sbjct: 319 ERRLLPRHCLLKVLRTKGLLNSELDYYSTAALSEK---KFVNKF 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,317
Number of Sequences: 37544
Number of extensions: 263514
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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