Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_C04
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 32 0.023
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 1.5
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 3.4
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 25 3.4
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 3.4
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 4.5
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 24 6.0
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 24 6.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 24 6.0
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 24 7.9
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 24 7.9
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 24 7.9
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 7.9
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 32.3 bits (70), Expect = 0.023
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 99 FLNRFSIMLVFWWEDLSFCIGYPFFKIF 182
FL RFS+ W +L +GY FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 1.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 235 WLCTHRFLLDCSFFSTNQNILKNG*PIQKDKSSHQKTNMIEKRFKKLIQD 86
WLCT L C+ S +I+ + KSS KTN++ F ++ +
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFFYHVVSN 394
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 33 FINLVHLDSXLC-ICFFLISCINFLNRFSIMLV 128
F+N++ + C CF++ +CI FL R L+
Sbjct: 329 FLNILKRMAIYCGACFWVYACIFFLTRVFCFLI 361
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 3.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 84 ISCINFLNRFSIMLVFWW-EDLSFCIGYPFFKIFWLVEKKEQSNRKRCV 227
IS ++ + + L FW E L Y FWL++KK+Q +++R V
Sbjct: 10 ISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIV 58
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 3.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 36 INLVHLDSXLCICFFLISCINFL 104
+ V LD+ +C ++ SC+N L
Sbjct: 220 VPFVELDNASRVCLYITSCVNLL 242
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 98 FFESLLYHVGFLVGRFVFL--YWLPI 169
+F+ + +V F+VG +FL YW+ I
Sbjct: 268 WFDFICNYVSFMVGSIIFLVVYWIGI 293
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 139 SHQKTNMIEKRFKKLIQDMRKKQMQXLESK*TKF 38
S Q+TN + +IQDM KKQ +S T+F
Sbjct: 958 SKQRTNEV---LLPVIQDMHKKQFVGTQSNLTQF 988
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 199 KNNPTGNDVYIAILPTSSFQLP 264
K NP+ NDV A L SF+ P
Sbjct: 54 KFNPSENDVLCASLKIKSFETP 75
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 227 YTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPP 132
YT FPV + + NQP E T QI P
Sbjct: 422 YTLFPVPVDVYDNQPNNPESLAQTTLLQISTP 453
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 133 QKTNMIEKRFKKLIQDMRKK 74
QK M EK+F+K + ++RK+
Sbjct: 221 QKKEMKEKKFEKQLLELRKR 240
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -2
Query: 245 VGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKINTGYE 81
V R Y F GL+FF + + TN + F ++ + I G++
Sbjct: 379 VWRGNTYEKFREGLYFFIEALLHDSHFATNVDVRKFFAKSMRSHPLVDDIYNGFD 433
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 23.8 bits (49), Expect = 7.9
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 94 LIF*IASL---SCWFSG-GKICLFVLVTHSSKYFGWLK 195
L+F ASL + FSG G + L LV H S+ FGW K
Sbjct: 229 LLFCTASLFEKTACFSGIGHVLLKDLV-HESRTFGWTK 265
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 7.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 225 HIVSCWIVLFFQP 187
H++SC+ LFF+P
Sbjct: 594 HVLSCYKTLFFEP 606
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,738
Number of Sequences: 5004
Number of extensions: 33758
Number of successful extensions: 111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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