Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_C04
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270... 29 1.4
02_04_0391 + 22576839-22577387 27 3.1
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479... 27 4.1
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 26 7.2
12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639... 26 9.6
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 26 9.6
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 26 9.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 26 9.6
>02_05_0287 -
27525722-27525812,27525927-27526057,27526945-27527022,
27527080-27527186,27527302-27527380,27528001-27528096,
27528192-27528443,27528691-27528840,27528953-27529277,
27529373-27529584
Length = 506
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 245 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 126
VGR + T+ P ++ F Q K FE W +T +IF +N
Sbjct: 81 VGRPVVVTADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 121
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 194 FNQPKYFEEWVTNTKRQIFPPENQHDREAI 105
FN+ K+ E TN Q+ P N+H+++ +
Sbjct: 47 FNKQKHVEIQPTNKLEQLIQPTNEHEQQQL 76
>04_04_0845 -
28646547-28646637,28646724-28646854,28647832-28647938,
28648043-28648121,28648578-28648667,28648814-28649065,
28649367-28649519,28649631-28649955,28650069-28650283
Length = 480
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 245 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 126
VGR + ++ P ++ F Q K FE W +T +IF +N
Sbjct: 82 VGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 122
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/67 (20%), Positives = 30/67 (44%)
Frame = -2
Query: 338 KLANREKSKYNNLISKNLKRNF*TMGNWKLEVGRMAMYTSFPVGLFFFFNQPKYFEEWVT 159
++ +R+ N L++++ + G K + + FP+ F + P+YF +
Sbjct: 358 RIIHRDIKASNILLTEDYQPQISDFGLAKWLPDKWTHHVVFPIEGTFGYMSPEYFMHGII 417
Query: 158 NTKRQIF 138
N K +F
Sbjct: 418 NEKTDVF 424
>12_02_0737 +
22662657-22662733,22662843-22662930,22663873-22663925,
22664067-22664542,22664645-22664805,22664889-22665086,
22665324-22665531,22665632-22665756,22665897-22666080,
22666184-22666344
Length = 576
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 175 LKNG*PIQKDKSSHQKTNMIEKRFKKLIQ 89
+KNG P Q ++ + Q++ M+E +F IQ
Sbjct: 374 MKNGKPRQINQCAFQESRMVEPKFTDQIQ 402
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 244 WVGWLCTHRFLLDCSFFSTNQNILK 170
W W C H C+FF NILK
Sbjct: 2433 WFNW-CNHLLQPYCNFFENYGNILK 2456
>04_04_0350 +
24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 185 PKYFEEWVTNTKRQIFPPENQHDREAIQKINTGYEEE 75
P+ +EW+T+ R I PE+ + + + I+T ++EE
Sbjct: 792 PRMEDEWLTDVLRMIQTPEDTYVYDRV--ISTIFDEE 826
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 154 QKDKSSHQKTNMIEKRFKKLIQDMRKKQM 68
+KDK HQK +I ++F L+ M M
Sbjct: 4860 KKDKKLHQKLELITEKFLNLLSRMGANTM 4888
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,745,063
Number of Sequences: 37544
Number of extensions: 177002
Number of successful extensions: 412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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