Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C03
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   4.9  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 194 FYCLYHLKY*LIIFVDYFRFTKRLCF 117
           FYC+Y ++  +++ ++ +  T  LCF
Sbjct: 55  FYCIYFIQLRVMMIMEIYNITNNLCF 80


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 593 GQYVFNTTHYREFK*IRPADEQIFFKSSRAGVLD 492
           G Y +  T +++F   R  D +IF+ +++  V D
Sbjct: 92  GPYTYTETEFKDFTQFRDNDNEIFYVNNKTWVYD 125


>AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical
           protein Y94A7B.7 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 213 ILKNIMILLFISFEILINNFRGLLSIYKTPLFL-SVFFSHVNYHF 82
           +  NI+ +   +F + I+ F G   +YKTP+ + SV +S  N HF
Sbjct: 11  VYSNILYITS-AFSLPIHIFGGYCILYKTPVIMKSVKWSLFNLHF 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,254
Number of Sequences: 27780
Number of extensions: 219954
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)