Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_C02
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   9.2  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    25   9.2  

>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 558 FQSSRPPSPSQAWWLLWPTALSCLELVRCPSTAPVWSTDR 439
           + +S  PS +Q+  +L    +  + +VRCPS  P++ T R
Sbjct: 56  YLNSAAPSKAQSHPVLLAAGVGGI-VVRCPSRKPIYRTTR 94


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 349 PAVV--LDAVNGVPLDTPEVVAARAAHFQAKAL 257
           PA++  L+ ++G PL+TP +   +  H + +A+
Sbjct: 325 PALIEGLNILDGYPLNTPSLAFPKRLHLEVEAM 357


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 334 DAVNGVPLDTPEVVA 290
           D +NG+P DTP V+A
Sbjct: 432 DLLNGIPEDTPNVLA 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,604
Number of Sequences: 5004
Number of extensions: 29806
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)